View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20780_high_5 (Length: 329)
Name: NF20780_high_5
Description: NF20780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20780_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 20899332 - 20899614
Alignment:
| Q |
18 |
agcagcagcagaaactgtgaccccacaattatattctataggacatggtctgtgctgtggggactgagtcagctttgatatggttgtccatttgtatttt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20899332 |
agcagcagcagcaactgtgaccccacaattatattccataggacatggtctgtgctgtggggactgagtcagctttgatatggttgtccatttgtatttt |
20899431 |
T |
|
| Q |
118 |
ggccatttgcaataggaaccgtccttttcttcagaatgttatttatttattattatgcagtttaatcaaaggacatgacccaaagttttgttgatattag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20899432 |
ggccatttgcaataggaaccgtccttttcttcagaatgttttttatttattattatgcagtttaatcaaaggacatgacccaaagttttgttgatattag |
20899531 |
T |
|
| Q |
218 |
gccaataacagggattgtttagctgttatggtatcgtttgcatgatcttgcatatgttaaaagtagtaggtggtaattgttag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20899532 |
gccaataacagggattgtttagctgttatggtatcgtttacatgatcttgcatatgttaaaagtagtaggtggtaattgttag |
20899614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University