View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20780_low_1 (Length: 299)

Name: NF20780_low_1
Description: NF20780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20780_low_1
NF20780_low_1
[»] chr8 (8 HSPs)
chr8 (18-288)||(2945473-2945743)
chr8 (27-288)||(2928841-2929102)
chr8 (18-286)||(3013682-3013950)
chr8 (30-288)||(37794213-37794471)
chr8 (15-102)||(2919327-2919414)
chr8 (15-72)||(2941823-2941880)
chr8 (126-229)||(2919438-2919541)
chr8 (150-182)||(2941950-2941982)
[»] chr6 (1 HSPs)
chr6 (27-288)||(4917361-4917622)
[»] chr3 (1 HSPs)
chr3 (27-288)||(1508013-1508268)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 2945473 - 2945743
Alignment:
Q  18 agttcagccagtgcaggaacataatcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2945473 agttcagccagtgcaggaacataatcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaagaatcaccgggaa 2945572  T
Q  118 cttcctcaatcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2945573 cttcctcaatcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataa 2945672  T
Q  218 actatagcttacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagcttcat 288  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2945673 actatagcttacattgatcggttctgttgtctcatggaaactcgagttgacaagactttgaacagcttcat 2945743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 288
Target Start/End: Original strand, 2928841 - 2929102
Alignment:
Q  27 agtgcaggaacataatcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaacttcctcaa 126  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |  ||||   |||||| ||||||||||| |    
T  2928841 agtgcagcaacatgatcatgattctcacgcaaaataccctcggatattgcttcagagaaacttgtagcacatctcaatgcatcaccaggaacttcctcca 2928940  T
Q  127 tcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagct 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  2928941 tcttctggatgataaacttgcagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccctgatgacaatgacaaactatagct 2929040  T
Q  227 tacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagcttcat 288  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2929041 tacattgatcggctctgttgtctcatggaaactcgagttgataagactttgaacagcttcat 2929102  T

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Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 3013950 - 3013682
Alignment:
Q  18 agttcagccagtgcaggaacataatcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaa 117  Q
    ||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||  |||    
T  3013950 agttcggccagtgcaggaatatcatcatgattctcacgcaaaataccctcggatattgcttcagagaaatttgtagcatacttcaatgaatcaccaagaa 3013851  T
Q  118 cttcctcaatcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataa 217  Q
    || | || |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||    
T  3013850 ctccatccatcttctggatgataaacttgcaactttgactttcccaacgtacccttttgtttgatttcttggtaatgatgtcccctgatgataatgataa 3013751  T
Q  218 actatagcttacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagcttc 286  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  3013750 actatagcttacattgattggctctgttgtctcatggaaactcaagttgataagactttgaacagcttc 3013682  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 37794213 - 37794471
Alignment:
Q  30 gcaggaacataatcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaacttcctcaatct 129  Q
    ||||||||| ||||||||||||||| ||||| ||| || ||||||| ||||||||||| ||| ||||| ||||    ||  ||  ||   || || | ||    
T  37794213 gcaggaacaaaatcatgattctcagacaaaacaccttctgatattgtttcagagaaatatgtcgcatatttcagtgcatttccccgaggctcatccaact 37794312  T
Q  130 tctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagcttac 229  Q
    ||||||||| ||||||  | ||||| |||||||| |||||| ||||||   |||||||||||||||| ||||| ||||| | ||||| | ||||||||||    
T  37794313 tctggatgaaaaacttggaactttgcctttcccagcgtaccattttgtcatctttctttgtaatgatgtcccctgatgacagtgatagattatagcttac 37794412  T
Q  230 attgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagcttcat 288  Q
      ||| |||  |  |||||||| ||||||||  ||||| ||||| ||||||||||||||    
T  37794413 cgtgaccgggacctttgtctcaaggaaactcaggttgagaagaccttgaacagcttcat 37794471  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 2919327 - 2919414
Alignment:
Q  15 atcagttcagccagtgcaggaacataatcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattca 102  Q
    ||||||||||  || |||||||||  |||||||||||||  ||||| ||| || ||||||||||||||||||| ||| ||||| ||||    
T  2919327 atcagttcagagagagcaggaacaagatcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgtggcatatttca 2919414  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 2941823 - 2941880
Alignment:
Q  15 atcagttcagccagtgcaggaacataatcatgattctcaggcaaaataccctcggata 72  Q
    ||||||||||  ||||||||||||| ||||||||||||| |||||| |||||| ||||    
T  2941823 atcagttcagtgagtgcaggaacatgatcatgattctcacgcaaaacaccctcagata 2941880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 2919438 - 2919541
Alignment:
Q  126 atcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagc 225  Q
    |||||||||||||  |||||| | ||||   ||||||| |||||| |||||| | |||||||||||||||| ||||| ||||| |  || |||||||| |    
T  2919438 atcttctggatgaagaacttagaacttttcttttcccagcgtaccattttgtcttctttctttgtaatgatgtcccctgatgacagcgacaaactataac 2919537  T
Q  226 ttac 229  Q
    ||||    
T  2919538 ttac 2919541  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 2941950 - 2941982
Alignment:
Q  150 ctttgactttcccaacgtacccttttgtttgct 182  Q
    |||||||||||| ||||||||||||||||||||    
T  2941950 ctttgactttccaaacgtacccttttgtttgct 2941982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 288
Target Start/End: Complemental strand, 4917622 - 4917361
Alignment:
Q  27 agtgcaggaacataatcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaacttcctcaa 126  Q
    ||||||||||||| ||| ||||||||| |||||| |||||| |||||||||||||| |||| ||||||||| ||||| |  ||| | ||| || | || |    
T  4917622 agtgcaggaacatgatcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatatgtagcatatttcaatatttcatcaggagctccatcca 4917523  T
Q  127 tcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagct 226  Q
    |||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||    
T  4917522 tcttttggattataaacttgcagctttgactctcccaacgcacccttttgttggctttcttggtaatgattttccctgatgataatgataaactatagct 4917423  T
Q  227 tacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagcttcat 288  Q
    ||||||||| |||||  |||||||||| |||||  |||||| || | |||||||||||||||    
T  4917422 tacattgattggctcctttgtctcatgaaaacttaagttgagaaaattttgaacagcttcat 4917361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 27 - 288
Target Start/End: Complemental strand, 1508268 - 1508013
Alignment:
Q  27 agtgcaggaacataatcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaacttcctcaa 126  Q
    ||||||||||||| ||||||||| ||| |||||| |||||| |||||||||||||||||||||||| |||| |||||  ||||  |    ||  | || |    
T  1508268 agtgcaggaacatgatcatgattttcatgcaaaacaccctcagatattgcttcagagaaatttgtaacatatttcaatgaatcctc----ac--catcca 1508175  T
Q  127 tcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagct 226  Q
    |||||||||||||||||||  | ||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||| ||  | |||||||||    
T  1508174 tcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagactatagct 1508075  T
Q  227 tacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagcttcat 288  Q
    ||||||||| || ||  ||||||||||||| ||  |||||| |||| |||||||||||||||    
T  1508074 tacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagcttcat 1508013  T

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