View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20781_high_1_N (Length: 337)
Name: NF20781_high_1_N
Description: NF20781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20781_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 182 - 308
Target Start/End: Complemental strand, 30034106 - 30033980
Alignment:
| Q |
182 |
aaatcaatatatcaaagaataatacaactcgtgtatagtaaaaatcacaactaaaccattatcatcttcacagaccttccaccatttccatgtcaaacat |
281 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30034106 |
aaatcaatatatcaaagaataatacaacccgtgtacagtaaaaatcacaactaaaccattatcatcttcacagaccttccaccatttccatctcaaacat |
30034007 |
T |
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| Q |
282 |
tcttttaattactcaataagataagac |
308 |
Q |
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| T |
30034006 |
tcttttaattactcaatgagataagac |
30033980 |
T |
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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 23147130 - 23147256
Alignment:
| Q |
181 |
aaaatcaatatatcaaagaataatacaactcgtgtatagtaaaaatcacaactaaaccattatcatcttcacagaccttccaccatttccatgtcaaaca |
280 |
Q |
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||||| ||||||||||||||||||||||| | |||| | ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23147130 |
aaaattaatatatcaaagaataatacaacccatgtacaataaaaatcacatctaaagcattttcatcttcacagaccttccaccatttccatgtcaaaca |
23147229 |
T |
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| Q |
281 |
ttcttttaattactcaataagataaga |
307 |
Q |
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|||||||||||||||||| | |||||| |
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| T |
23147230 |
ttcttttaattactcaatgacataaga |
23147256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 55077745 - 55077555
Alignment:
| Q |
10 |
attattcttacattaatttttattttagtgcgtttattaacttttacattaat------------ata----tgtacatataccaagtacagtaagataa |
93 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
55077745 |
attatttttacattaatttttattttagtgcgtttattaacttttacattaattcgtttctaagaataacaatgtacatataccaagtacagtaagataa |
55077646 |
T |
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| Q |
94 |
tatcttatgccagaattnnnnnnnnnn-tctcaataaaccatgttaataaacatattccaaatattgtaaaaatcgtatctttttccgaaa |
183 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |
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| T |
55077645 |
tatcttatgccagaattaaaaaaaaaaatctcaataaaccatgttaataaaaatattccaaatattgtaaaaatcgaatccttttccgaaa |
55077555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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