View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20781_low_1 (Length: 253)
Name: NF20781_low_1
Description: NF20781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20781_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 2346350 - 2346513
Alignment:
| Q |
63 |
atgtacttgagagagtgcagctgcacacccttacttcttgataattataccaaaattt-taattatttttaatttgcatcccctggataattaccattgc |
161 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||| |
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| T |
2346350 |
atgtacttgagagggtgcagctgcacaccctgacttcttgataattataccaaatttcctacttatttctaatttgcatcccctggataattaccattgc |
2346449 |
T |
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| Q |
162 |
accagttcagctcaatttctcacattttgtcacacttcattcaaaggttgtatcaccaaattct |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2346450 |
accagttcagctcaatttctcacattttgtcacacttcatccaaaggttgtatcaccaaattct |
2346513 |
T |
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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 32816370 - 32816207
Alignment:
| Q |
63 |
atgtacttgagagagtgcagctgcacacccttacttcttgataattataccaaaattt-taattatttttaatttgcatcccctggataattaccattgc |
161 |
Q |
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||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||| |
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| T |
32816370 |
atgtacttgagagggtgcagctgcacaccctgactttttgataattataccaaatttcctatttatttctaatttgcatcccctggataattaccattgc |
32816271 |
T |
|
| Q |
162 |
accagttcagctcaatttctcacattttgtcacacttcattcaaaggttgtatcaccaaattct |
225 |
Q |
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| T |
32816270 |
accagttcagctcaatttttcacattttgtcacacttcatccaaaggttgtatcaccaaattct |
32816207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 41661983 - 41662146
Alignment:
| Q |
63 |
atgtacttgagagagtgcagctgcacacccttacttcttgataattataccaaaattt-taattatttttaatttgcatcccctggataattaccattgc |
161 |
Q |
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||||||||||||| |||||||||| |||||| |||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||| |
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| T |
41661983 |
atgtacttgagagggtgcagctgcgcaccctgacttcttgataattataccaaatttcctacttatttctaatttgcatcccctggataattaccattgc |
41662082 |
T |
|
| Q |
162 |
accagttcagctcaatttctcacattttgtcacacttcattcaaaggttgtatcaccaaattct |
225 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41662083 |
actagttcagctcaatttttcacattttgtcacacttcatccaaaggttgtatcaccaaattct |
41662146 |
T |
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Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 9779673 - 9779836
Alignment:
| Q |
63 |
atgtacttgagagagtgcagctgcacacccttacttcttgataattataccaaaattttaa-ttatttttaatttgcatcccctggataattaccattgc |
161 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||| | |||||| |||||||||| ||||||||||||||||||| |
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| T |
9779673 |
atgtacttgagagggtgcagctgcacaccctgacttcttgaacattataccaaattttttacttatttctaatttgcatagcctggataattaccattgc |
9779772 |
T |
|
| Q |
162 |
accagttcagctcaatttctcacattttgtcacacttcattcaaaggttgtatcaccaaattct |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
9779773 |
accagttcagctcaatttctcacattttgtcacacttcattcaaaggttgtataaccaaattct |
9779836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 12698963 - 12698931
Alignment:
| Q |
19 |
ctagttccactacttattttaatgtacctcgtt |
51 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
12698963 |
ctagttccactacttattataatgtacctcgtt |
12698931 |
T |
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