View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20782_high_1 (Length: 345)
Name: NF20782_high_1
Description: NF20782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20782_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 27640740 - 27640498
Alignment:
| Q |
30 |
ataacccatacccttctttctcatgacccttcaacctaaaatcaggattacaaccctcccctctcttcttagtgaaatcaaacacataagcctccgaatt |
129 |
Q |
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| T |
27640740 |
ataacccatacccttctttctcatgacccttcaacctaaaatcaggattacaaccctcccctctcttcttagtgaaatcaaacacataaaccaccgaatt |
27640641 |
T |
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| Q |
130 |
acaagtcttcgcagcaatgacattcgcattctgcggcatagcccgcgccctattcacctccccatcgacaaaaatcctctgagtaatctcaacctnnnnn |
229 |
Q |
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| T |
27640640 |
acaggtcttcgcagcaacgacattcgcattctgcggcatagcccgcgccctattcacctccccatcaacaagaatcctctgagtaatctcaacctaaaaa |
27640541 |
T |
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| Q |
230 |
nncaaacatcattcaggcatttcatcaaacagttggtacccat |
272 |
Q |
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| T |
27640540 |
aacaaacatcattcaggcatttcatcaaacagttggtacccat |
27640498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 27640465 - 27640433
Alignment:
| Q |
304 |
ccttgggaagaatagggttttcaggatctgtgg |
336 |
Q |
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| T |
27640465 |
ccttgggaagaatagggttttcaggatctgtgg |
27640433 |
T |
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