View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20782_high_4 (Length: 318)
Name: NF20782_high_4
Description: NF20782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20782_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 26 - 310
Target Start/End: Original strand, 13861406 - 13861688
Alignment:
| Q |
26 |
atcaacatatatgtcatatactagaaaaagacctgaatgtgagccatgatacaacaaaaccctagtcctccgcctacacatatatgcacacaaattgctt |
125 |
Q |
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| T |
13861406 |
atcaacatatatgtcatatactagaaaaagacctgaatgtgagccacgatgcaacaaaaccctagtcttccgcctacacatatatgcacacaaattgctt |
13861505 |
T |
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| Q |
126 |
gtgggcagccacgttacttgaataagaattacaccccctacttctctaacaattcaagcacctgatatatcatataatcatatataagttctctttttac |
225 |
Q |
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| T |
13861506 |
gtgggcagccacgttacttgaataagaattacaccccctacttctctaacaattcaagcacctgatatatcatataattatatataagttctctttttac |
13861605 |
T |
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| Q |
226 |
ctcccattgtgtatggtcctcctagagatatttatcataaacagtttagttgccagtcatcaacagataataaagcagtattatc |
310 |
Q |
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| T |
13861606 |
ctcccattgtgtatggtcctcctagatatatttatcataaactgtttagttaccagtcatcaacag--aaaaaagcagtattatc |
13861688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 9438945 - 9439059
Alignment:
| Q |
46 |
ctagaaaaagacctgaatgtgagccatgatacaacaaaaccctagtcctccgcctacacatatatgcacacaaa-ttgcttgtgggcagccacgttactt |
144 |
Q |
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| T |
9438945 |
ctagaaaaatatttgaaggtgagccacgacacaacaaaacgctaggccttcgcctagacatgtaggcacaaaaaattgcttgtgagcagccacataactt |
9439044 |
T |
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| Q |
145 |
gaataagaattacac |
159 |
Q |
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| T |
9439045 |
gaataggaattacac |
9439059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 20696365 - 20696228
Alignment:
| Q |
46 |
ctagaaaaagacctgaatgtgagccatgatacaacaaaaccctagtcctccgcctacacatatatgcacacaaattgcttgtgggcagccac----gtta |
141 |
Q |
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||||||||||| |||| ||||||||||| |||||||||||||| ||| ||||||||||| || | || | ||||||||| |||||||| | | |
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| T |
20696365 |
ctagaaaaagatttgaaggtgagccatgacgcaacaaaaccctagcccttcgcctacacatgtaggaac---atttgcttgtgagcagccacataactaa |
20696269 |
T |
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| Q |
142 |
cttgaataagaattacac-cccctacttctctaacaattca |
181 |
Q |
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| T |
20696268 |
cttgaataagaattacacacccctagtcctctaataattca |
20696228 |
T |
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