View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_109 (Length: 238)
Name: NF20783_high_109
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_109 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 45758367 - 45758558
Alignment:
| Q |
20 |
ctttggtgggtcggacaccagtgcgaaagccnnnnnnnttatgttttggataaaaatttgannnnnnnnnatg--atgactaaaaacaaatgttagtata |
117 |
Q |
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| T |
45758367 |
ctttggtgggtcggaaacccgtgcgaaagccaaaaaaattatgttttggataaaaatttgatttttttttttgtgatgactaaaaacaaatgttagtata |
45758466 |
T |
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| Q |
118 |
tttatagggagaaaaacatatttaactcatgtaatataaataaaagagaatgctatgtatcgaagaaaaaacttttaaataatgactcgcta |
209 |
Q |
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| T |
45758467 |
tttatagggagaaaaacatatttaactcatgtaatataaataaaagagaatgctatgtatcgaagaaaaaacttttaaataatgactcgcta |
45758558 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 42694502 - 42694469
Alignment:
| Q |
110 |
ttagtatatttatagggagaaaaacatatttaac |
143 |
Q |
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| T |
42694502 |
ttagtatatttatagggacaaaaacatatttaac |
42694469 |
T |
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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 43200 - 43248
Alignment:
| Q |
95 |
gactaaaaacaaatgttagtatatttatagggagaaaaacatatttaac |
143 |
Q |
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| T |
43200 |
gactaaaacgaaaagttggtatatttatagggacaaaaacatatttaac |
43248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 33129255 - 33129303
Alignment:
| Q |
95 |
gactaaaaacaaatgttagtatatttatagggagaaaaacatatttaac |
143 |
Q |
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| T |
33129255 |
gactaaaacaaaaagttggtatatttatagggacaaaaacatatttaac |
33129303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 28838189 - 28838141
Alignment:
| Q |
95 |
gactaaaaacaaatgttagtatatttatagggagaaaaacatatttaac |
143 |
Q |
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| T |
28838189 |
gactaaaacgaaaagttggtatatttatagggacaaaaacatatttaac |
28838141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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