View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_high_114 (Length: 236)
Name: NF20783_high_114
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_114 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26002385 - 26002164
Alignment:
| Q |
1 |
aattatcaaatagccaaaata-aatactaatatttcttaaaaatttgacaccttaagagcacccacgatatagatcctcattttcgagtagctaagtgga |
99 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||| |||| |||||||||||||| |
|
|
| T |
26002385 |
aattatcaactagccaaaatacaatactaatatttcttaaaaatttggcaccttaagagcatccacgatataaatactcgtttttgagtagctaagtggg |
26002286 |
T |
|
| Q |
100 |
tcacacttatacacatcactcaaaataaataaatagattaaacattatttataagggaagtaaaaaatacacgccgaagtaatctcaattatacaatacc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
26002285 |
tcacacttatacacatcactcaaaataaataaatagattaaacattatttataagggtcgtaaaaattacacgtagaagtaatctcaattatacaataca |
26002186 |
T |
|
| Q |
200 |
cgtgcaagtgttagacaataag |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26002185 |
tgtgcaagtgttagacaataag |
26002164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University