View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_116 (Length: 235)
Name: NF20783_high_116
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_116 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 44253618 - 44253766
Alignment:
| Q |
1 |
ctattctttttcaaacataggaaagacaaaaggatagcaattggctggcacgaggaattaaccatactcccatttgcagtacattctccttcatgtccag |
100 |
Q |
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| T |
44253618 |
ctattctttttcaaacataggaaagacaagaggatagcaattggctggaacgaggaattaaccatactcccatttgcagtacattctccttcatgtccaa |
44253717 |
T |
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| Q |
101 |
tatcctggaatttggtctcattcaattcatcccttgtgaattagtacta |
149 |
Q |
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| T |
44253718 |
tatcctggaatttggtctcattcaattcatcccttgtaaattaatacta |
44253766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 44250205 - 44250276
Alignment:
| Q |
3 |
attctttttcaaacataggaaagacaaaaggatagcaattggctggcacgaggaattaaccatactcccattt |
75 |
Q |
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| T |
44250205 |
attctttttcaaacataggaatgacaaaaagatagcaattgactagcacgaggaattaa-catactctcattt |
44250276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 44250036 - 44250094
Alignment:
| Q |
4 |
ttctttttcaaacataggaaagacaaaaggatagcaattggctggcacgaggaattaac |
62 |
Q |
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| T |
44250036 |
ttctttttcaaacatatgaatgacaaaaagatagcaattggctggcatgaggaattaac |
44250094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 50112369 - 50112440
Alignment:
| Q |
3 |
attctttttcaaacataggaaagacaaaaggatagcaattggctggcacgaggaattaaccatactcccattt |
75 |
Q |
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| T |
50112369 |
attcttcttcaaacataggaatgacaaaaggatagcaattggctggcacgaggaattaa-catactctcattt |
50112440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 30077370 - 30077328
Alignment:
| Q |
167 |
tctcaaattatatgttgctttataatattaataaaagattaat |
209 |
Q |
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| T |
30077370 |
tctcaaattatatgttgctttataatactaatacaatattaat |
30077328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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