View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_117 (Length: 234)
Name: NF20783_high_117
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_117 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 29188 - 29387
Alignment:
| Q |
19 |
aaacagcggcttgttcaaatttcagtaccctacagtgctatagcgtcgttatagtcgatatttgaaaacatttgtactaagtagtgtatgacagagcaat |
118 |
Q |
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| T |
29188 |
aaacagcagcttgttcaaatttcagtatgctacagtgatatagcgtcgttatagttgatatttgagaacatttgtactaagtagtgtatgacagagcaat |
29287 |
T |
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| Q |
119 |
attgatttgttcaatactgtccactacgctatagttccatattagctgctatttgacaatactgagtcgctggatgctgtttgtataataggatgaaact |
218 |
Q |
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| T |
29288 |
attgatttgttcaatactgtccactacgctagagttccacattagctgcaatttgacaatactgagtcgctggatgctgtttgtataataggatgaaact |
29387 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 2101636 - 2101691
Alignment:
| Q |
53 |
gtgctatagcgtcgttatagtcgatatttgaaaaca-tttgtactaagtagtgtat |
107 |
Q |
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| T |
2101636 |
gtgctatagcgtcgttatagccgttatttgacaacactttgtactaaatagtgtat |
2101691 |
T |
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