View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_118 (Length: 232)
Name: NF20783_high_118
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_118 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 27559589 - 27559358
Alignment:
| Q |
1 |
tcctttgccttattatttcatgtaccgcttgttgattatcatgatgtgcatggcttggttccactattcctttaaaattcatttattttttcaagtgctt |
100 |
Q |
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| T |
27559589 |
tcctttgccttattattttatgtaccgcttgttgattataatgatgtgcatggcttggttccactattcctttaaaattcatttattttttcaagtgctt |
27559490 |
T |
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| Q |
101 |
aattattgaaagcctcaaattttgtccatcaaagccgggaaaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctacattaagagct |
200 |
Q |
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| T |
27559489 |
aattattgaaagcctcaaattttgtccatcaaagccgggaaaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctacattaagagct |
27559390 |
T |
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| Q |
201 |
aaacttctaggaagaccaacaaaggatggctt |
232 |
Q |
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| T |
27559389 |
aaacttctaggaagaccaacaaaggattgctt |
27559358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 36662024 - 36661901
Alignment:
| Q |
3 |
ctttgccttattatttcatgtaccgcttgttgattatcatgatgtgcatggcttggttccactattcctttaaaattcatttattttttcaagtgcttaa |
102 |
Q |
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|||||||||||||||| ||||||| |||| ||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
36662024 |
ctttgccttattattttatgtaccacttgctgattttaatgatgtgcatgaattggttccactgttcctttaaaattcatttattttttcaagaacttaa |
36661925 |
T |
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| Q |
103 |
ttattgaaagcctcaaattttgtc |
126 |
Q |
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| T |
36661924 |
ttatagaaagcctcaaattttgtc |
36661901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 132 - 232
Target Start/End: Original strand, 42351462 - 42351562
Alignment:
| Q |
132 |
aagccgggaaaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctacattaagagctaaacttctaggaagaccaacaaaggatggct |
231 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||| |
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| T |
42351462 |
aagcccggacaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctatattaagagctaaacttccaggaagaccaaccaaggattgct |
42351561 |
T |
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| Q |
232 |
t |
232 |
Q |
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| T |
42351562 |
t |
42351562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 29408866 - 29408771
Alignment:
| Q |
33 |
tgattatcatgatgtgcatggcttggttccactattcctttaaaattcatttattttttcaagtgcttaattattgaaagcctcaaattttgtcca |
128 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||| |
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| T |
29408866 |
tgattttcatgatgtgcatggattggttccactattcctttaaaattcatttaccttttcaagaacttaattatagaaagcctcaaattatgtcca |
29408771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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