View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_121 (Length: 226)
Name: NF20783_high_121
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_121 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 22091936 - 22091799
Alignment:
| Q |
7 |
ggaccttgctactttcatcaaggtatcatcttatgtgcttattttaattaacctcaattgtttatgactggaattgcattatattcaaataaataacatg |
106 |
Q |
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| T |
22091936 |
ggaccttgctactttcatcaaggtatcatcttatgtgcttattttaattaacctcaattgtttatgactggaattgcattatattcaaataaataacatg |
22091837 |
T |
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| Q |
107 |
ccaaatttgtgttgaggttggagaaatccatggaatat |
144 |
Q |
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| T |
22091836 |
ccaaatttgtcttgaggtagaagaaatccatggaatat |
22091799 |
T |
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Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 22091667 - 22091590
Alignment:
| Q |
149 |
tgatagttgccagtggcttaagcttaaaagcccaaacataaatgcaaagatttttgaaacgttgaatttgagttatct |
226 |
Q |
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| T |
22091667 |
tgatagttgccagtggcttaagcttaaaagcccaaacataaatgcaatgatttttgaaacgttgaatttgagttatct |
22091590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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