View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_127 (Length: 216)
Name: NF20783_high_127
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_127 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 14232097 - 14231917
Alignment:
| Q |
20 |
agacgaagcattgcgatgcatccaaatcgcagaagaagcaatctcatcaggtaacaaatctcgcgctctcaaattcatcaagatcgctcagcgcctcaac |
119 |
Q |
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| T |
14232097 |
agacgaagcattgcgatgcatccaaatcgcagaagaagcaatctcatcaggtaacaaatctcgcgctctcaaattcatcaagatcgctcagcgcctcaac |
14231998 |
T |
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| Q |
120 |
cgcgatctacctcttgattccttgttagccagatgcgaacgactcaaatcacagtcttccgcttcttccacaagaggctct |
200 |
Q |
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| T |
14231997 |
cgcgatctacctcttgattccttgttagccaaatgcgaacgactcaaatcacagtcttctgcttcttccacaagaggctct |
14231917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 14228466 - 14228327
Alignment:
| Q |
20 |
agacgaagcattgcgatgcatccaaatcgcagaagaagcaatctcatcaggtaacaaatctcgcgctctcaaattcatcaagatcgctcagcgcctcaac |
119 |
Q |
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||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
14228466 |
agacgaagctttacgatgcattcaaatcgcagaagaagcaatctcatcaggtaacaaatctcgcgctctcaaattcatcaaaatcgctcaacgcctcaac |
14228367 |
T |
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| Q |
120 |
cgcgatctacctcttgattccttgttagccagatgcgaac |
159 |
Q |
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| T |
14228366 |
cacgatttaccactcgattccctcttcgccaaatgcgaac |
14228327 |
T |
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