View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_128 (Length: 214)
Name: NF20783_high_128
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_128 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 45305013 - 45304838
Alignment:
| Q |
19 |
gatcagcttatttccataagcgacgacctcattgaggttttgcaagatcccgctaatgaccgtgatctcaacatcatctctcaatgtctccaccacacac |
118 |
Q |
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| T |
45305013 |
gatcagcttatttccataagcaacgacctcattgaggttttgcaagatcccgctaatgaccgtgatctcaacatcatctctcaatgtctccaccacacac |
45304914 |
T |
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| Q |
119 |
tctccgtttcttcctcctgccactccgacctcaatgaggttctctcctcgttccaaggtcaatttactcttttgcc |
194 |
Q |
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| T |
45304913 |
tctccgtttcttcctcctgccactccgacctcaatgaggttctctcctcgttccaaggtcaatttactcttttgcc |
45304838 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 25738524 - 25738602
Alignment:
| Q |
31 |
tccataagcgacgacctcattgaggttttgcaagatcccgctaatgaccgtgatctcaacatcatctctcaatgtctcc |
109 |
Q |
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||||||||| |||||||| || |||||||| ||||||| |||||||| ||||| ||||||||| ||| ||||||||||| |
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| T |
25738524 |
tccataagcaacgacctcgttaaggttttgaaagatcctgctaatgatcgtgaactcaacatcctctgtcaatgtctcc |
25738602 |
T |
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