View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_high_16 (Length: 461)
Name: NF20783_high_16
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 77 - 401
Target Start/End: Original strand, 38221442 - 38221780
Alignment:
| Q |
77 |
tctatatctgtaagtcttgacgttactgtaattggttatttttcttctactcaagcgtttgttaatgtcaatttagtgcaaaatttaagacaagtcttga |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38221442 |
tctatatctgtaagtcttgacgttactgtaattggttatttttcttctactcaagcgtttgttaatgtcaatttagtgcaaaatataagacaagtcttga |
38221541 |
T |
|
| Q |
177 |
aattcttgtcattgaaggtgaggcattggttttgttaccaaccattaact--------------gtatatggagctgtagaacatactcacaattcgaaa |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
38221542 |
aattcttgtcattgaaggtgaggcattggttttgttaccaaccattaactatagagcagtggaagtatatggagctgtagaacctactcacaattccaaa |
38221641 |
T |
|
| Q |
263 |
ctgttaatcatgaatgcctttatcatgatgcttgatgatcccaaaaagtttcttctctttctaattctgatgcatcatgcaattgataatgtctcatata |
362 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38221642 |
ctgttaatcatgagtgcctttatcatgatgcttcatgatcccaaaaagtttcttctctttctaattctgatgcatcatgcaattgataatgtctcatata |
38221741 |
T |
|
| Q |
363 |
tgattttttaatatccgcgatttggtcatgtttaagaat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38221742 |
tgattttttaatatccgcgatttggtcatgtttaagaat |
38221780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 38221321 - 38221384
Alignment:
| Q |
17 |
attagtacagtgttatttaataggactatagcgtagcggaattccaacaacctgttattttcta |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38221321 |
attagtacagtgttatttaataggactatagcgtagcggaattccaacaacctgttattttcta |
38221384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 449
Target Start/End: Original strand, 38150988 - 38151097
Alignment:
| Q |
340 |
tgcaattgataatgtctcatatatgattttttaatatccgcgatttggtcatgtttaagaatagcttacttctttctatgcaactctgaatcagatggca |
439 |
Q |
| |
|
|||||||||||||| ||||| | | || |||| | ||||| ||||||| |||||| ||||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
38150988 |
tgcaattgataatgcctcatgtttcgttatttagtgtccgcaatttggttatgttttgcaatagctcacttctttctatacaactctgaatcggatggca |
38151087 |
T |
|
| Q |
440 |
caaagagtat |
449 |
Q |
| |
|
|||||||||| |
|
|
| T |
38151088 |
caaagagtat |
38151097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 38157028 - 38157072
Alignment:
| Q |
36 |
ataggactatagcgtagcggaattccaacaacctgttattttcta |
80 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
38157028 |
atagtactatagcatagcggaattctaacaacctattattttcta |
38157072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University