View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_29 (Length: 405)
Name: NF20783_high_29
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 12 - 385
Target Start/End: Complemental strand, 41468295 - 41467922
Alignment:
| Q |
12 |
acagaaccaggaacaggaacagcaacagcaccaggtgcaagaccaagaattcttgtatatcttccaacaaaccaagtcattcattccttctctcaacttg |
111 |
Q |
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| T |
41468295 |
acagaaccaggaacaggaacagcaacagcaccaggtgcaagaccaagagttcttgtatatcttccaacaaaccaagtcattcattccttctctcaacttg |
41468196 |
T |
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| Q |
112 |
agcaacgactcactgaacttggttggactcgttactctcactctcatcttccagaccacatccagtttcatcgttcagacacatctccacaccttctatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41468195 |
agcaacgactcactgaacttggttggactcgttactctcactctcatcttccagaccacatccagtttcatcgttcagacacatctccacaccttctatc |
41468096 |
T |
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| Q |
212 |
actcccaagaaacttcagtagttttaagcactttcatatgtacgacattgttattcaaaaccgttcnnnnnnncaagttcgtgaccctacttcttagttc |
311 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41468095 |
actcccaagaaacttcaatagttttaagcactttcatatgtacgacattgttattcaaaaccgttctttttttcaagttcgtgaccctacttcttagttc |
41467996 |
T |
|
| Q |
312 |
ttactactaagcctatacgtagcttcattttgtcttttatcatcatcttgatcgtgcattgttagttagctagg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41467995 |
ttactactaagcctatacgtagcttcattttgtcttttatcatcatcttgatcgtgcattgttagttagctagg |
41467922 |
T |
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