View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_high_3 (Length: 698)
Name: NF20783_high_3
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 413 - 688
Target Start/End: Complemental strand, 37779595 - 37779319
Alignment:
| Q |
413 |
gtgaatttggtgcacg-tattaaggccatggatttcaggttttgttcttgttgatttgattcccttatccttcaagtaaagagcttcctctaaggtcatt |
511 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37779595 |
gtgaatttggtgcacgatattaaggccatggacttcaggttttgttcttgttgatttgattcccttatccttcaagtaaagagcttcctctaaggtcatt |
37779496 |
T |
|
| Q |
512 |
aatagaaatcacaaacagattgatgaaatatgtatattattgaatggaaataatgagcatagaagctctacaatgaagggatcacatttcaagagtcaga |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37779495 |
aatagaaatcacaaacagattgatgaaatatgtatattattgaatggaaataatgagcatagaagctctacaatgaagggatcacatttcaagagtcaga |
37779396 |
T |
|
| Q |
612 |
aactcctaaccagagagatgttctctcctaacctcctcaatagtaatagaatgaatgaattttggatcttgtctgtg |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37779395 |
aactcctaaccagagagatgttctctcctaacctactcaatagtaatagaatgaatgaattttggatcttgtctgtg |
37779319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 275 - 420
Target Start/End: Complemental strand, 38386938 - 38386795
Alignment:
| Q |
275 |
ttcaaccaacatattttcgttaggccttaactgcttattatttttccttgttttaggtactttggtcgtgacgtggaatgtat-tttaagtttttcagaa |
373 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||| || ||||||||||| |||||||||| |||||| || |||||||| |||||||||||||||| |
|
|
| T |
38386938 |
ttcaactaatatattttcgttaggccttaact---tataatctttccttgtttcaggtactttgatcgtgatgttgaatgtatctttaagtttttcagaa |
38386842 |
T |
|
| Q |
374 |
agaggtttgtagctatttgaacattatgtgttggtgtttgtgaattt |
420 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
38386841 |
agaggtttgtagttattttgacattatgtgttggtgtttgtgaattt |
38386795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 524 - 585
Target Start/End: Original strand, 3382150 - 3382211
Alignment:
| Q |
524 |
aaacagattgatgaaatatgtatattattgaatggaaataatgagcatagaagctctacaat |
585 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
3382150 |
aaacagaatgatgaaatatgtgtattattcaatgtaaatgatgagcatagaagctctacaat |
3382211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University