View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_high_35 (Length: 386)
Name: NF20783_high_35
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 31472743 - 31473052
Alignment:
| Q |
16 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31472743 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt |
31472842 |
T |
|
| Q |
116 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31472843 |
tataatataaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
31472942 |
T |
|
| Q |
216 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaactac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31472943 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaactac |
31473042 |
T |
|
| Q |
316 |
aaatatttga |
325 |
Q |
| |
|
|||||||||| |
|
|
| T |
31473043 |
aaatatttga |
31473052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 31499312 - 31499621
Alignment:
| Q |
16 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31499312 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt |
31499411 |
T |
|
| Q |
116 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31499412 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
31499511 |
T |
|
| Q |
216 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaactac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31499512 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaattttaaatcaatataaaactac |
31499611 |
T |
|
| Q |
316 |
aaatatttga |
325 |
Q |
| |
|
|||||||||| |
|
|
| T |
31499612 |
aaatatttga |
31499621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 31493926 - 31494235
Alignment:
| Q |
16 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31493926 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt |
31494025 |
T |
|
| Q |
116 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31494026 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttattatcagtt |
31494125 |
T |
|
| Q |
216 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaactac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31494126 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaattttaaatcaatataaaactac |
31494225 |
T |
|
| Q |
316 |
aaatatttga |
325 |
Q |
| |
|
|||||||||| |
|
|
| T |
31494226 |
aaatatttga |
31494235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 31513836 - 31514146
Alignment:
| Q |
16 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31513836 |
tcatattgtcgaattgtatattttaaaactttattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt |
31513935 |
T |
|
| Q |
116 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttact-atcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
31513936 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcgtcctataaatttaattcattattcatgttactaatcaat |
31514035 |
T |
|
| Q |
215 |
ttcttagattgtttaattctaatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaacta |
314 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31514036 |
ttcttagattgtttaattcgaatctattagtgattaaacctttatccttgagataatccttaattcatctcttagtgaatttaaaatcaatataaaactt |
31514135 |
T |
|
| Q |
315 |
caaatatttga |
325 |
Q |
| |
|
||||||||||| |
|
|
| T |
31514136 |
caaatatttga |
31514146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 31494308 - 31494239
Alignment:
| Q |
317 |
aatatttgagattaaatatgttcttactatcgtagtctatatatagttgtgaaccattgaaattattata |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31494308 |
aatatttgagattaaatatgttcttactatcgtagtctatatatagttgtgaacccttgaaattattata |
31494239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 31499694 - 31499625
Alignment:
| Q |
317 |
aatatttgagattaaatatgttcttactatcgtagtctatatatagttgtgaaccattgaaattattata |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31499694 |
aatatttgagattaaatatgttcttactatcgtagtctatatatagttgtgaacccttgaaattattata |
31499625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 31514219 - 31514150
Alignment:
| Q |
317 |
aatatttgagattaaatatgttcttactatcgtagtctatatatagttgtgaaccattgaaattattata |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31514219 |
aatatttgagattaaatatgttcttactattgtagtctatatatagttgtgaacccttgaaattattata |
31514150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 31473124 - 31473056
Alignment:
| Q |
317 |
aatatttgagattaaatatgttcttactatcgtagtctatatatagttgtgaaccattgaaattattata |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
31473124 |
aatatttgagattaaatatgttcttactatggtagt-tatatatagttgtgaacccttgaaattattata |
31473056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 330
Target Start/End: Original strand, 35765228 - 35765521
Alignment:
| Q |
36 |
ttttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttg-ctactacgaaaattgaataaaagtcggttataatctaaatgtgttag |
134 |
Q |
| |
|
||||| |||||| ||||| |||||| ||||||| ||||||||||||||||| | || |||||| ||||||||||||| |||||| |||||| | || |
|
|
| T |
35765228 |
ttttagaacttagttgaagaaaaaggtacgagtatgttgtttgtaatttttttcaacaacgaaacttgaataaaagtcaactataataaaaatgtttcag |
35765327 |
T |
|
| Q |
135 |
c-atgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtttcttagattgtttaattc |
233 |
Q |
| |
|
||||||| | ||||||||| |||||| |||||||||||| || |||||| | |||||||| |||||||| |||| ||||| |||||||| |||||| |
|
|
| T |
35765328 |
ggatgagtatgacttggttactaactttgcactattaatctgattctataagctgaattcattcttcatgttgctattagttttctagattgtgtaattc |
35765427 |
T |
|
| Q |
234 |
taatctattggtgattaaacctttaaccttgagataacccttaattcatctcttagtgaatttaaaatcaatataaaac-tacaaatatttgagatta |
330 |
Q |
| |
|
|| ||| | | || ||||||||||||||||||||||||| || |||| ||||||||||||||||||| || |||| || |||||||||| |||| |
|
|
| T |
35765428 |
tagtctctcagcgactaaacctttaaccttgagataaccccta----atcttttagtgaatttaaaatcaagattaaacatataaatatttgaaatta |
35765521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University