View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_high_36 (Length: 374)

Name: NF20783_high_36
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_high_36
NF20783_high_36
[»] chr6 (14 HSPs)
chr6 (53-358)||(31494300-31494605)
chr6 (53-358)||(31499686-31499991)
chr6 (53-358)||(31473116-31473401)
chr6 (229-358)||(31514371-31514500)
chr6 (53-173)||(31514211-31514331)
chr6 (19-61)||(31473044-31473086)
chr6 (19-61)||(31494227-31494269)
chr6 (19-61)||(31499613-31499655)
chr6 (19-61)||(31514138-31514180)
chr6 (200-231)||(18771776-18771807)
chr6 (200-233)||(8549930-8549963)
chr6 (201-233)||(1338851-1338883)
chr6 (200-232)||(2564764-2564796)
chr6 (200-232)||(9661751-9661783)
[»] chr7 (7 HSPs)
chr7 (200-234)||(30891275-30891309)
chr7 (200-231)||(35357701-35357732)
chr7 (200-229)||(15954133-15954162)
chr7 (201-238)||(24505116-24505153)
chr7 (200-232)||(18519913-18519945)
chr7 (200-232)||(26605430-26605462)
chr7 (206-234)||(42583760-42583788)
[»] chr1 (9 HSPs)
chr1 (200-233)||(51787844-51787877)
chr1 (200-231)||(24230946-24230977)
chr1 (200-231)||(32710120-32710151)
chr1 (200-231)||(34038540-34038571)
chr1 (200-234)||(6526804-6526838)
chr1 (200-233)||(2249942-2249975)
chr1 (200-233)||(31075986-31076019)
chr1 (200-232)||(12105535-12105567)
chr1 (200-228)||(45767686-45767714)
[»] scaffold0194 (1 HSPs)
scaffold0194 (202-238)||(17871-17907)
[»] chr3 (3 HSPs)
chr3 (200-232)||(40021078-40021110)
chr3 (200-231)||(16136998-16137029)
chr3 (200-233)||(50412448-50412481)
[»] chr5 (4 HSPs)
chr5 (200-231)||(38293623-38293654)
chr5 (200-233)||(25929558-25929591)
chr5 (200-232)||(36339222-36339254)
chr5 (200-228)||(36428283-36428311)
[»] chr4 (8 HSPs)
chr4 (200-231)||(29581967-29581998)
chr4 (200-231)||(32846029-32846060)
chr4 (200-231)||(33491537-33491568)
chr4 (202-231)||(352850-352879)
chr4 (202-231)||(56104779-56104808)
chr4 (200-232)||(42177716-42177748)
chr4 (200-232)||(50383705-50383737)
chr4 (200-232)||(53936888-53936920)
[»] chr2 (7 HSPs)
chr2 (200-231)||(6945340-6945371)
chr2 (200-231)||(42849703-42849734)
chr2 (200-229)||(38064660-38064689)
chr2 (200-228)||(3260965-3260993)
chr2 (200-232)||(4049336-4049368)
chr2 (206-234)||(43359101-43359129)
chr2 (200-232)||(45157529-45157561)
[»] scaffold0184 (1 HSPs)
scaffold0184 (200-232)||(16958-16990)
[»] scaffold0078 (1 HSPs)
scaffold0078 (200-232)||(55854-55886)
[»] chr8 (1 HSPs)
chr8 (200-232)||(9497537-9497569)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 53 - 358
Target Start/End: Original strand, 31494300 - 31494605
Alignment:
Q  53 tcaaatattcacaaatttcactctcgttttaaattgtaaatcttacgtgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaat 152  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31494300 tcaaatattcacaaatttcaatctcgttttaaattgtaaatcttacatgaatttaaggttggacaaacaataataagcattaaggtcatgttttgtcaat 31494399  T
Q  153 acaactcatccataacaagagnnnnnnntatctacccataatattagtcaaatatattggatgtaccatagaatttgccaattaaatcacccctcaccct 252  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  31494400 acaactcatccataacaagagaaaaaaatatctacccataatattagtcaaatatatcgggtgtaccatagaatttgccaattaaatcacccctcaccct 31494499  T
Q  253 aattctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtccatcta 352  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31494500 aattcttcctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtccatcta 31494599  T
Q  353 atttgt 358  Q
    ||||||    
T  31494600 atttgt 31494605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 53 - 358
Target Start/End: Original strand, 31499686 - 31499991
Alignment:
Q  53 tcaaatattcacaaatttcactctcgttttaaattgtaaatcttacgtgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaat 152  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31499686 tcaaatattcacaaatttcaatctcgttttaaattgtaaatcttacatgaatttaaggttggacaaacaataataagcattaaggtcatgttttgtcaat 31499785  T
Q  153 acaactcatccataacaagagnnnnnnntatctacccataatattagtcaaatatattggatgtaccatagaatttgccaattaaatcacccctcaccct 252  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||    
T  31499786 acaactcatccataacaagagaaaaaaatatctacccataatattagtcaaatatatcaggtgtaccatagaatttgccaattaaatcacccctcaccct 31499885  T
Q  253 aattctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtccatcta 352  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31499886 aattcttcctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtccatcta 31499985  T
Q  353 atttgt 358  Q
    ||||||    
T  31499986 atttgt 31499991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 53 - 358
Target Start/End: Original strand, 31473116 - 31473401
Alignment:
Q  53 tcaaatattcacaaatttcactctcgttttaaattgtaaatcttacgtgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaat 152  Q
    |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31473116 tcaaatattcccaaatttcactctcattttaaattgtaaatcttacatgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaat 31473215  T
Q  153 acaactcatccataacaagagnnnnnnn-tatctacccataatattagtcaaatatattggatgtaccatagaatttgccaattaaatcacccctcaccc 251  Q
    |||||||||||||||||||||        |||||||| ||||||||| |||                  ||||||||||||||||||| |||||||||||    
T  31473216 acaactcatccataacaagagaaaaaaaatatctaccaataatattaatca------------------tagaatttgccaattaaattacccctcaccc 31473297  T
Q  252 taattctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtccatct 351  Q
    ||   ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  31473298 ta---ctttctttgtcgttagtaacttacgttagtgtctctcttcagaaaccaatttcctcaagtcaatcacgtgattttttaattattcatgtccatct 31473394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 229 - 358
Target Start/End: Original strand, 31514371 - 31514500
Alignment:
Q  229 gccaattaaatcacccctcaccctaattctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31514371 gccaattaaatcacccctcaccctaattctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatttcctcaagtcaatcacgtgat 31514470  T
Q  329 tttctaattattcatgtccatctaatttgt 358  Q
    ||| ||||||||||||||||||||||||||    
T  31514471 tttttaattattcatgtccatctaatttgt 31514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 31514211 - 31514331
Alignment:
Q  53 tcaaatattcacaaatttcactctcgttttaaattgtaaatcttacgtgaatttaaggttggacaaacgataataagcattaaggtcatgttttgtcaat 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  31514211 tcaaatattcacaaatttcactctcgttttaaattgtaaatcttacatgaattcaaggttggacaaacgataataagcattaaggtcatgttttgtcgat 31514310  T
Q  153 acaactcatccataacaagag 173  Q
    |||||||||||||||||||||    
T  31514311 acaactcatccataacaagag 31514331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 31473086 - 31473044
Alignment:
Q  19 tatatagttgtgaacccttgaaattattatattttcaaatatt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31473086 tatatagttgtgaacccttgaaattattatattttcaaatatt 31473044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 31494269 - 31494227
Alignment:
Q  19 tatatagttgtgaacccttgaaattattatattttcaaatatt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31494269 tatatagttgtgaacccttgaaattattatattttcaaatatt 31494227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 31499655 - 31499613
Alignment:
Q  19 tatatagttgtgaacccttgaaattattatattttcaaatatt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31499655 tatatagttgtgaacccttgaaattattatattttcaaatatt 31499613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 31514180 - 31514138
Alignment:
Q  19 tatatagttgtgaacccttgaaattattatattttcaaatatt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31514180 tatatagttgtgaacccttgaaattattatattttcaaatatt 31514138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Complemental strand, 18771807 - 18771776
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  18771807 tcaaatatattggatgtaccatagaatttgcc 18771776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 8549930 - 8549963
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgccaa 233  Q
    ||||||||||||| ||||||||||||||||||||    
T  8549930 tcaaatatattgggtgtaccatagaatttgccaa 8549963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 1338883 - 1338851
Alignment:
Q  201 caaatatattggatgtaccatagaatttgccaa 233  Q
    ||||| |||||||||||||||||||||||||||    
T  1338883 caaatttattggatgtaccatagaatttgccaa 1338851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 2564796 - 2564764
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    |||||||||||| ||||||||||||||||||||    
T  2564796 tcaaatatattgaatgtaccatagaatttgcca 2564764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 9661783 - 9661751
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||| |||||||||||||||||||    
T  9661783 tcaaatatattgggtgtaccatagaatttgcca 9661751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 30891309 - 30891275
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgccaat 234  Q
    |||||||||||||||||||||||||||||||||||    
T  30891309 tcaaatatattggatgtaccatagaatttgccaat 30891275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Complemental strand, 35357732 - 35357701
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  35357732 tcaaatatattggatgtaccatagaatttgcc 35357701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 15954162 - 15954133
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttg 229  Q
    ||||||||||||||||||||||||||||||    
T  15954162 tcaaatatattggatgtaccatagaatttg 15954133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 24505153 - 24505116
Alignment:
Q  201 caaatatattggatgtaccatagaatttgccaattaaa 238  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  24505153 caaatttattgggtgtaccatagaatttgccaattaaa 24505116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 18519945 - 18519913
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||| |||||||||||||||||||||||    
T  18519945 tcaaatatagtggatgtaccatagaatttgcca 18519913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 26605430 - 26605462
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||| |||||||||||||||||||    
T  26605430 tcaaatatattgggtgtaccatagaatttgcca 26605462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 42583788 - 42583760
Alignment:
Q  206 atattggatgtaccatagaatttgccaat 234  Q
    |||||||||||||||||||||||||||||    
T  42583788 atattggatgtaccatagaatttgccaat 42583760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 51787844 - 51787877
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgccaa 233  Q
    ||||||||||||||||||||||||||||||||||    
T  51787844 tcaaatatattggatgtaccatagaatttgccaa 51787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 24230946 - 24230977
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  24230946 tcaaatatattggatgtaccatagaatttgcc 24230977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 32710120 - 32710151
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  32710120 tcaaatatattggatgtaccatagaatttgcc 32710151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 34038540 - 34038571
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  34038540 tcaaatatattggatgtaccatagaatttgcc 34038571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 6526804 - 6526838
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgccaat 234  Q
    ||||||||||||| |||||||||||||||||||||    
T  6526804 tcaaatatattgggtgtaccatagaatttgccaat 6526838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 2249942 - 2249975
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgccaa 233  Q
    ||||||||| ||||||||||||||||||||||||    
T  2249942 tcaaatatagtggatgtaccatagaatttgccaa 2249975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 31075986 - 31076019
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgccaa 233  Q
    ||||||||||||| ||||||||||||||||||||    
T  31075986 tcaaatatattgggtgtaccatagaatttgccaa 31076019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 12105535 - 12105567
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||| |||||||||||||||||||    
T  12105535 tcaaatatattgggtgtaccatagaatttgcca 12105567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 45767714 - 45767686
Alignment:
Q  200 tcaaatatattggatgtaccatagaattt 228  Q
    |||||||||||||||||||||||||||||    
T  45767714 tcaaatatattggatgtaccatagaattt 45767686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 17871 - 17907
Alignment:
Q  202 aaatatattggatgtaccatagaatttgccaattaaa 238  Q
    |||| ||||||||||||||||||||||||||||||||    
T  17871 aaatttattggatgtaccatagaatttgccaattaaa 17907  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 40021110 - 40021078
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    |||||||||||||||||||||||||||||||||    
T  40021110 tcaaatatattggatgtaccatagaatttgcca 40021078  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 16136998 - 16137029
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  16136998 tcaaatatattggatgtaccatagaatttgcc 16137029  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 50412448 - 50412481
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgccaa 233  Q
    ||||||||||||| ||||||||||||||||||||    
T  50412448 tcaaatatattgggtgtaccatagaatttgccaa 50412481  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Complemental strand, 38293654 - 38293623
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  38293654 tcaaatatattggatgtaccatagaatttgcc 38293623  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 25929591 - 25929558
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgccaa 233  Q
    ||||||||||||| ||||||||||||||||||||    
T  25929591 tcaaatatattgggtgtaccatagaatttgccaa 25929558  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 36339222 - 36339254
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||| |||||||||||||||||||    
T  36339222 tcaaatatattgggtgtaccatagaatttgcca 36339254  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 36428283 - 36428311
Alignment:
Q  200 tcaaatatattggatgtaccatagaattt 228  Q
    |||||||||||||||||||||||||||||    
T  36428283 tcaaatatattggatgtaccatagaattt 36428311  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Complemental strand, 29581998 - 29581967
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  29581998 tcaaatatattggatgtaccatagaatttgcc 29581967  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 32846029 - 32846060
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  32846029 tcaaatatattggatgtaccatagaatttgcc 32846060  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 33491537 - 33491568
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  33491537 tcaaatatattggatgtaccatagaatttgcc 33491568  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 352850 - 352879
Alignment:
Q  202 aaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||    
T  352850 aaatatattggatgtaccatagaatttgcc 352879  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 56104779 - 56104808
Alignment:
Q  202 aaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||    
T  56104779 aaatatattggatgtaccatagaatttgcc 56104808  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 42177716 - 42177748
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||| |||||||||||||||||||    
T  42177716 tcaaatatattgggtgtaccatagaatttgcca 42177748  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 50383705 - 50383737
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||||||||||||| |||||||||    
T  50383705 tcaaatatattggatgtaccatataatttgcca 50383737  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 53936888 - 53936920
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||| |||||||||||||||||||    
T  53936888 tcaaatatattgggtgtaccatagaatttgcca 53936920  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Complemental strand, 6945371 - 6945340
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  6945371 tcaaatatattggatgtaccatagaatttgcc 6945340  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 42849703 - 42849734
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcc 231  Q
    ||||||||||||||||||||||||||||||||    
T  42849703 tcaaatatattggatgtaccatagaatttgcc 42849734  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 38064689 - 38064660
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttg 229  Q
    ||||||||||||||||||||||||||||||    
T  38064689 tcaaatatattggatgtaccatagaatttg 38064660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 3260993 - 3260965
Alignment:
Q  200 tcaaatatattggatgtaccatagaattt 228  Q
    |||||||||||||||||||||||||||||    
T  3260993 tcaaatatattggatgtaccatagaattt 3260965  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 4049336 - 4049368
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||| |||||||||||||||||||||||    
T  4049336 tcaaatatagtggatgtaccatagaatttgcca 4049368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 43359129 - 43359101
Alignment:
Q  206 atattggatgtaccatagaatttgccaat 234  Q
    |||||||||||||||||||||||||||||    
T  43359129 atattggatgtaccatagaatttgccaat 43359101  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 45157561 - 45157529
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||| |||||||||||||||||||    
T  45157561 tcaaatatattgggtgtaccatagaatttgcca 45157529  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 16958 - 16990
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||| |||||||||||||||||||    
T  16958 tcaaatatattgggtgtaccatagaatttgcca 16990  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 55886 - 55854
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    ||||||||||||| |||||||||||||||||||    
T  55886 tcaaatatattgggtgtaccatagaatttgcca 55854  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 9497569 - 9497537
Alignment:
Q  200 tcaaatatattggatgtaccatagaatttgcca 232  Q
    |||||||||||| ||||||||||||||||||||    
T  9497569 tcaaatatattgaatgtaccatagaatttgcca 9497537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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