View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_39 (Length: 368)
Name: NF20783_high_39
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 37592145 - 37591794
Alignment:
| Q |
1 |
cagactggatattcatctccagctcaagatgctatcaggagggatcttaatctatctttggaagaggtaagccagtaatcattctctctcatattcttga |
100 |
Q |
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| T |
37592145 |
cagactgggtattcatctccagctcaagatgctatcaggagggatcttaatctgtctttggaagaggtaagccagtaatcattctctctcatattcttga |
37592046 |
T |
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| Q |
101 |
aggaacctaagaattagatggattaattatagtttagggattacttgttatatttctatatatcaaaatggagagaaagtgatagtttagggaccaaatt |
200 |
Q |
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| T |
37592045 |
aggaacctaagaattagatggattaattatagtttagggattacttgttatatttctatatatcaaaatggagagaaagtgatagtttagggaccaaatt |
37591946 |
T |
|
| Q |
201 |
cacggttcattcaaaacataggaaattgactgaaaatgattagcatacagttgagctttggctcctgaactattaagcagtttgcagcaagaaattaata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37591945 |
cacggttcattcaaaacataggaaattgactgaaaatgattagcatacagttgagctttggctcctgaactattaagcaatttgcagcaagaaattaata |
37591846 |
T |
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| Q |
301 |
caatgttcttattttataaaacttgacttatcaaaactaaaaatgtatgtta |
352 |
Q |
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| T |
37591845 |
caatgttcttattttataaaacttgacttatcaaaactaaaaatgtatgtta |
37591794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 37462214 - 37462288
Alignment:
| Q |
5 |
ctggatattcatctccagctcaagatgctatcaggagggatcttaatctatctttggaagaggtaagccagtaat |
79 |
Q |
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| T |
37462214 |
ctggatattcatctccaactcaagaagctattaggaaggatcttagtctgtctttggcagaggtaagccagtaat |
37462288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 25492928 - 25492847
Alignment:
| Q |
117 |
gatggattaattatagtttagggattacttgttatatttctatatatcaaaatggagagaaagtgatagtttagggaccaaatt |
200 |
Q |
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||||||||||| |||||||| ||| || ||| || ||||||||| || ||| ||||||||| ||||||||||| |||||||||| |
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| T |
25492928 |
gatggattaataatagtttaaggactaattggtacatttctata-at-aaattggagagaatgtgatagtttaaggaccaaatt |
25492847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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