View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_high_40 (Length: 358)

Name: NF20783_high_40
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_high_40
NF20783_high_40
[»] chr8 (4 HSPs)
chr8 (1-343)||(5719346-5719688)
chr8 (9-343)||(5687237-5687572)
chr8 (86-343)||(5666242-5666502)
chr8 (278-343)||(5652890-5652955)
[»] chr4 (4 HSPs)
chr4 (155-343)||(105866-106054)
chr4 (155-343)||(166403-166591)
chr4 (39-71)||(14964306-14964338)
chr4 (55-95)||(31262910-31262950)
[»] scaffold0013 (1 HSPs)
scaffold0013 (155-343)||(90717-90905)
[»] chr7 (2 HSPs)
chr7 (155-343)||(13054343-13054531)
chr7 (27-79)||(32699337-32699389)
[»] chr3 (4 HSPs)
chr3 (186-343)||(12135871-12136028)
chr3 (21-79)||(3027073-3027132)
chr3 (28-90)||(48322283-48322345)
chr3 (37-88)||(24313526-24313578)
[»] chr2 (3 HSPs)
chr2 (27-88)||(1334963-1335025)
chr2 (26-95)||(25622498-25622568)
chr2 (28-88)||(24389702-24389763)
[»] chr1 (3 HSPs)
chr1 (29-90)||(34861289-34861351)
chr1 (57-98)||(27934796-27934839)
chr1 (21-65)||(52765408-52765452)
[»] chr6 (1 HSPs)
chr6 (28-79)||(13445819-13445871)
[»] chr5 (1 HSPs)
chr5 (20-83)||(23023591-23023654)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 5719346 - 5719688
Alignment:
Q  1 tttcattcattgtcatgtcatttaaaaaagggtctcgttaacgagtatcccggagcactctttaagcattctaaattaaagaattattttaaaaatatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  5719346 tttcattcattgtcatgtcatttaaaaaagggtctcgttaacgagtattccggggcactctttaagcattttaaattaaagaattattttaaaaatatac 5719445  T
Q  101 catgcaattgatttagttcattattagtaaataataattaaatatttaacgacaaaccttttttgagcatgaaagatggctctctccccacccaccatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5719446 catgcaattgatttagttcattattagtaaataataattaaatatttaacgacaaaccttttttgagcatgaaagatggctctctccccacccaccatcc 5719545  T
Q  201 tctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| ||| |||||| ||||||||||||||||    
T  5719546 tctctttgtattgtaagcagaaatttaacagctttgcgaattgcaacacaattctcataagtcttgcccgcgactgctagaccaccaagagcaaaccaag 5719645  T
Q  301 aaccataagtgaagcaaattccccaatttccataccatgaacc 343  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5719646 aaccataagtgaagcaaattccccaatttccataccatgaacc 5719688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 5687237 - 5687572
Alignment:
Q  9 attgtcatgtcatttaaaaaagggtctcgttaacgagtatccc-ggagcactctttaagcattctaaattaaagaattattttaaaaatataccatgcaa 107  Q
    |||||||| |||||| ||||||||||| |||||||||| |||| ||  ||||||||||||||| ||||||||  ||||||||| || |||||||||||||    
T  5687237 attgtcatatcattttaaaaagggtcttgttaacgagtgtccccggtacactctttaagcattgtaaattaagtaattatttttaatatataccatgcaa 5687336  T
Q  108 ttgatttagttcattattagtaaataataattaaatatttaacgacaaaccttttttgagcatgaaagatggctctctccccacccaccatcctctcttt 207  Q
    || ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5687337 ttaatttagttcattattagtaaataataattaattatttaaagacaaaccttttttgagcatgaaagatggctctctccccacccaccatcctctcttt 5687436  T
Q  208 gtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccata 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5687437 gtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttgccggcggctgttagaccgccaagagcaaaccaagaaccata 5687536  T
Q  308 agtgaagcaaattccccaatttccataccatgaacc 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  5687537 agtgaagcaaattccccaatttccataccatgaacc 5687572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 86 - 343
Target Start/End: Original strand, 5666242 - 5666502
Alignment:
Q  86 attttaaaaatataccatgcaattgatttagttcattattagtaaata---ataattaaatatttaacgacaaaccttttttgagcatgaaagatggctc 182  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||   |||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  5666242 attttaaaaatataccatgcaattaatttagttcattattagtaaataataataattaattatttaactacaaaccttttttgagcttgaaagatggctc 5666341  T
Q  183 tctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagac 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5666342 tctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagac 5666441  T
Q  283 cgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaacc 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5666442 cgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaacc 5666502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 5652890 - 5652955
Alignment:
Q  278 tagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaacc 343  Q
    |||||||||||| || ||  ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  5652890 tagaccgccaagtgcgaagaaagaaccataaatgaagcaaattccccaattcccataccatgaacc 5652955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 155 - 343
Target Start/End: Complemental strand, 106054 - 105866
Alignment:
Q  155 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattc 254  Q
    ||||||||||| || |||||||| |||||| |||||||||||||||||||| ||| |||| || ||||||||||||||||||||||| ||||| |||||     
T  106054 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtgttgtgagaagaaatttaacagctttgcgaatagcagcgcaattg 105955  T
Q  255 tcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaacc 343  Q
      ||||||||| || || |||| || ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  105954 gtataagtcttgccagcagctgctaaaccaccaagagcaaaccaagaaccataagtgaagcaaactccccagtttccataccatgaacc 105866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 155 - 343
Target Start/End: Complemental strand, 166591 - 166403
Alignment:
Q  155 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattc 254  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||| | ||  |||||| | || |||||||||||||| |||||||| | |||||||||     
T  166591 aaccttttttgggcatgaaagatagctctccccccacccaccatcttttccctgtattctcagaagaaatttaacagccttgcgaatcgtagcacaattg 166492  T
Q  255 tcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaacc 343  Q
      ||||||||| || || |||| || ||| ||||||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||    
T  166491 gtataagtctttccagcagctgctaaaccaccaagagcaaaccaacaaccataagtaaagcaaactccccagtttccataccatgaacc 166403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 14964306 - 14964338
Alignment:
Q  39 taacgagtatcccggagcactctttaagcattc 71  Q
    |||||||| ||||||||||||||||||||||||    
T  14964306 taacgagtgtcccggagcactctttaagcattc 14964338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 31262910 - 31262950
Alignment:
Q  55 gcactctttaagcattctaaattaaagaattattttaaaaa 95  Q
    |||||||||||||||||||||||||  ||||||||| ||||    
T  31262910 gcactctttaagcattctaaattaagtaattatttttaaaa 31262950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 155 - 343
Target Start/End: Original strand, 90717 - 90905
Alignment:
Q  155 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattc 254  Q
    ||||||||| | ||||||||||| |||||||||||| ||||| || | |||||||||||| || ||||||||||||||||| ||||| ||| |||||||     
T  90717 aacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagctttacgaatagcatcacaatta 90816  T
Q  255 tcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaacc 343  Q
      |||| |||| || || |||| || ||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  90817 gtataattcttgccagcagctgctaaaccaccaagagcgaaccaagaaccataagtgaaacaaattccccaacttccataccatgaacc 90905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 155 - 343
Target Start/End: Complemental strand, 13054531 - 13054343
Alignment:
Q  155 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattc 254  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||  || ||||||| ||||||||| |||||  || || ||||     
T  13054531 aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgttgagagaagaaattgaacagctttacgaatcacaacagaattg 13054432  T
Q  255 tcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaacc 343  Q
      ||||||||| || || |||| || ||| |||||||||||  ||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  13054431 ctataagtctttccagcagctgctaaacctccaagagcaaaataagtaccataaatgaagcaaattccccaacttccataccatgaacc 13054343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 32699337 - 32699389
Alignment:
Q  27 aaagggtctcgttaacgagtatcccggagcactctttaagcattctaaattaa 79  Q
    ||||||||| |||||||||||| | || ||||||||||| ||| |||||||||    
T  32699337 aaagggtcttgttaacgagtattctggggcactctttaaacatactaaattaa 32699389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 12135871 - 12136028
Alignment:
Q  186 ccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgc 285  Q
    |||||||| ||||  |||| |||  |||| || ||||||||||| ||||||||||| |||||||||||   ||||||||| || || |||| || ||| |    
T  12135871 ccccacccgccattttctccttgcgttgtgagaagaaatttaactgctttgcgaatagcagcacaattggtataagtctttccagcagctgctaaaccac 12135970  T
Q  286 caagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaacc 343  Q
    |||| || ||||||||||||||| |||||||||| ||||||  |||||||||||||||    
T  12135971 caagtgccaaccaagaaccataaatgaagcaaataccccaagctccataccatgaacc 12136028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 3027132 - 3027073
Alignment:
Q  21 tttaaaaaagggtctcgttaacgagtatc-ccggagcactctttaagcattctaaattaa 79  Q
    |||||| |||||||| ||||||||||  | ||||||||||||||||||||||||||||||    
T  3027132 tttaaataagggtcttgttaacgagtgcctccggagcactctttaagcattctaaattaa 3027073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 48322345 - 48322283
Alignment:
Q  28 aagggtctcgttaacgagtatcccggagcactctttaagcattctaaattaaagaattatttt 90  Q
    |||||||| |||||||||||| | || | ||||||||||||||||||| |||  |||||||||    
T  48322345 aagggtcttgttaacgagtattcaggggtactctttaagcattctaaaataagtaattatttt 48322283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 24313526 - 24313578
Alignment:
Q  37 gttaacgagtatcc-cggagcactctttaagcattctaaattaaagaattatt 88  Q
    |||||||||| ||| ||| ||||||||||| |||||||||||||| |||||||    
T  24313526 gttaacgagtgtcctcggggcactctttaaacattctaaattaaacaattatt 24313578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 1335025 - 1334963
Alignment:
Q  27 aaagggtctcgttaacgagtatc-ccggagcactctttaagcattctaaattaaagaattatt 88  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| | ||||| || |||||||    
T  1335025 aaagggtcttgttaacgagtatctccggggcactctttaagcatcccaaatttaataattatt 1334963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 25622498 - 25622568
Alignment:
Q  26 aaaagggtctcgttaacgagta-tcccggagcactctttaagcattctaaattaaagaattattttaaaaa 95  Q
    |||||||||| ||||||||||  |||||  ||||||||||| |||||||||||||  ||||||||| ||||    
T  25622498 aaaagggtcttgttaacgagtgctcccgatgcactctttaaacattctaaattaagtaattatttttaaaa 25622568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 24389763 - 24389702
Alignment:
Q  28 aagggtctcgttaacgagtatcc-cggagcactctttaagcattctaaattaaagaattatt 88  Q
    |||||||| |||||| ||||||| ||| ||||||||||||||| |||||||||  |||||||    
T  24389763 aagggtcttgttaacaagtatccacggggcactctttaagcatgctaaattaagtaattatt 24389702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 34861351 - 34861289
Alignment:
Q  29 agggtctcgttaacgagtatcccggag-cactctttaagcattctaaattaaagaattatttt 90  Q
    ||||||| ||||||||||  ||||| | ||||||||||||||||||||||||  |||||||||    
T  34861351 agggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaattatttt 34861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 27934839 - 27934796
Alignment:
Q  57 actctttaagcattctaaattaaagaattat--tttaaaaatat 98  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  27934839 actctttaagcattctaaattaaataattattatttaaaaatat 27934796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 52765452 - 52765408
Alignment:
Q  21 tttaaaaaagggtctcgttaacgagtatcccggagcactctttaa 65  Q
    |||||| || ||||||||||||||||  |||||||||||||||||    
T  52765452 tttaaataaaggtctcgttaacgagtgccccggagcactctttaa 52765408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 13445871 - 13445819
Alignment:
Q  28 aagggtctcgttaacgagtatccc-ggagcactctttaagcattctaaattaa 79  Q
    |||||||| |||||||||| |||| || ||||||||||||||| |||||||||    
T  13445871 aagggtcttgttaacgagtgtccccggtgcactctttaagcatgctaaattaa 13445819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 23023591 - 23023654
Alignment:
Q  20 atttaaaaaagggtctcgttaacgagtatccc-ggagcactctttaagcattctaaattaaagaa 83  Q
    ||||||| |||||||| ||||||||||  ||| || |||||||||||||||||| ||||||||||    
T  23023591 atttaaataagggtcttgttaacgagtgcccccggggcactctttaagcattct-aattaaagaa 23023654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University