View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_41 (Length: 357)
Name: NF20783_high_41
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 36998745 - 36999069
Alignment:
| Q |
19 |
ccctcaacatggtccatgcacttgtttatcccttgttgtgtttcaataatgcagttttcccctttaattaaacgcttaaaataaataaacccgttaatat |
118 |
Q |
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| T |
36998745 |
ccctcaacatggtccatgcacttgtttatcccttgttgtgtttcaataatgcagttttcccctttaattaaacgcttaaaataaataaacccgttaatat |
36998844 |
T |
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| Q |
119 |
tggagaagaagatacatgagtgtcattctctaaggcttgagaaaaatgttctaaaagaaaaagaaacaagcagaaaatacaatggatttttagcttagtt |
218 |
Q |
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| T |
36998845 |
tggagaagaagatacatgagtgtcattctctaaggcttgagaaaaatgttctaaaagaaaaagaaacaagcagaaaatacaatggatttttagcttagtt |
36998944 |
T |
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| Q |
219 |
acttttgagttagattgtaaacaagtaattaatgacattcaccatgtaaaatccaatcgatcaaatttggttctattcttgattattgtagagctatttt |
318 |
Q |
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| T |
36998945 |
atttttgagttagattgtaaacaagtaattaatgacattcaccatgtaaaatccaatcgatcaaatttggttctattcttgattattgtagagctatttt |
36999044 |
T |
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| Q |
319 |
attcagacacaacatctattaggtt |
343 |
Q |
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||||||| |||| |||||||||||| |
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| T |
36999045 |
attcagatacaatatctattaggtt |
36999069 |
T |
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