View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_high_47 (Length: 333)

Name: NF20783_high_47
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_high_47
NF20783_high_47
[»] chr3 (17 HSPs)
chr3 (13-321)||(30914585-30914893)
chr3 (13-295)||(19812248-19812527)
chr3 (13-246)||(20016069-20016302)
chr3 (13-255)||(20036471-20036713)
chr3 (13-251)||(20046135-20046370)
chr3 (13-276)||(19956071-19956334)
chr3 (13-255)||(19848998-19849240)
chr3 (118-252)||(26647015-26647146)
chr3 (13-255)||(26653160-26653399)
chr3 (13-254)||(19818566-19818804)
chr3 (13-255)||(19951132-19951371)
chr3 (178-255)||(24840007-24840084)
chr3 (44-253)||(19853522-19853731)
chr3 (184-255)||(19858080-19858151)
chr3 (191-255)||(19943728-19943792)
chr3 (186-253)||(19989532-19989599)
chr3 (184-276)||(19838380-19838472)
[»] chr1 (1 HSPs)
chr1 (13-247)||(1717230-1717461)
[»] chr5 (2 HSPs)
chr5 (32-253)||(9815047-9815265)
chr5 (121-253)||(26354903-26355035)
[»] chr8 (3 HSPs)
chr8 (184-255)||(22652127-22652198)
chr8 (118-243)||(22685656-22685778)
chr8 (54-253)||(22689564-22689763)
[»] chr7 (6 HSPs)
chr7 (123-231)||(12581424-12581529)
chr7 (123-231)||(12497241-12497346)
chr7 (123-231)||(12521106-12521211)
chr7 (178-231)||(12519825-12519878)
chr7 (178-231)||(12580114-12580167)
chr7 (20-92)||(12581560-12581632)
[»] chr4 (2 HSPs)
chr4 (156-251)||(6397749-6397844)
chr4 (142-244)||(6398280-6398382)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 30914893 - 30914585
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||       |||||||||||||    
T  30914893 ctatcaccaccaacttgatattttgacaaaccaactattgttttcttaaacaaacttaaatctttgtatatgctagccaatttttttggtgctaatgcaa 30914794  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30914793 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 30914694  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactcttataaagttcttgtctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30914693 gaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactcttataaagttcttgtctt 30914594  T
Q  313 gcgatgatg 321  Q
    |||||||||    
T  30914593 gcgatgatg 30914585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 19812527 - 19812248
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||||||  |||||||||| ||| |||| |||||||||||||| ||||||| |||||||||||||||||||||       ||||| || ||||    
T  19812527 ctatcaccaccaacaggatattttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaa 19812428  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   | ||||||||||||| ||||||   | || ||||||||| |  |||||||||||| ||| ||||| ||||||||||||||||||||||||| |||    
T  19812427 taggataccctctagcaagaagaatag---cgatcggaaacaaagactttttcaccaaatatttatgaggaaaaacaaaaattgacaaccaagtagcaag 19812331  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactct 295  Q
     |||||||||||||||||||||||| ||||| ||| ||||||| | |||  | |||||||  || ||||||||| ||||||||    
T  19812330 aaatgcttcatgttcaatttcactacctttaccaacgaaaatattgatccattttgatgtggtagccttaccttttttactct 19812248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 20016069 - 20016302
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||| || ||||||||||| ||| |||| |||||||||||||| ||||||| |||||||||||||||||||||       ||||| || ||||    
T  20016069 ctatcaccacccacatgatattttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaa 20016168  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagt 209  Q
     |   || | |||||||||||||||||   |||| ||||||||| ||||||||||  ||   | ||| |||||||||||||||||||||| ||||||||     
T  20016169 taggatttcgtctagcaagatgaatag---caatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagc 20016265  T
Q  210 aaggaatgcttcatgttcaatttcactaactttatca 246  Q
    ||| |||||||||||||||||||||||| ||||||||    
T  20016266 aagaaatgcttcatgttcaatttcactacctttatca 20016302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 20036471 - 20036713
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    |||||||||||||| ||| ||||||| ||| |||| |||||||||||||| ||| ||| ||| |||||||  ||||| ||       |||||||| ||||    
T  20036471 ctatcaccaccaacatgacattttgacaaatcaacaattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaa 20036570  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatc---tttgtgagggaaaacaaaaattgacaaccaagtagt 209  Q
     |   || |||||||||||||  | ||   |||||||||||||| |||||||||||||||    ||| ||||| |||||||||| ||||||||||||||     
T  20036571 tacgatttcctctagcaagatatacag---caataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagc 20036667  T
Q  210 aaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||    
T  20036668 aagaaatgcttcatgttcaatttcactacctttatcaatgaaaata 20036713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 20046370 - 20046135
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||||||  |||||||| | | | |||  ||||| |||||||||||||||| ||| |||||||||||| ||||       ||||| || ||||    
T  20046370 ctatcaccaccaaccggatattttaacagatcaataattgtgttcttaaataaacttaaatccttatatatgctacccaaaacagcaggtgccaaagcaa 20046271  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
         || ||||||||||||| |||||   |||||| ||||||| || ||||||||| || ||| ||||| |||||||||||||||||||||||||||||    
T  20046270 ttggatttcctctagcaagattaatag---caatagaaaacaaacaatttttcaccatatttttatgaggaaaaacaaaaattgacaaccaagtagtaag 20046174  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaa 251  Q
    ||| ||||| ||||||||||||||| ||||||| |||||    
T  20046173 gaaggcttcgtgttcaatttcactacctttatcgatgaa 20046135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 19956334 - 19956071
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||| ||  |||||||||| ||| ||||| || ||||||| || ||| ||| ||| |||||||||||||| ||       ||||| || ||||    
T  19956334 ctatcaccacccacaggatattttgacaaatcaactgtttttttctttaacaaagttaaatccttatatatgctagctaaaacagctggtgccaaagcaa 19956235  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagt 209  Q
     |   || |||||||||||||||| |    |||||||||||||| ||||||||||  ||   | ||| |||||||||||||||||||||||||||||||     
T  19956234 taggatttcctctagcaagatgaacaa---caataggaaacaaataacttttcacggaagaatatttatgagggaaaacaaaaattgacaaccaagtagc 19956138  T
Q  210 aaggaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttcta 276  Q
    ||| || ||||||||||||||||||||| |||||||||||||||||  ||||  || ||||||||||    
T  19956137 aagaaaagcttcatgttcaatttcactacctttatcaatgaaaatatccatccatagtgatgttcta 19956071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 19849240 - 19848998
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    |||||||||||||| ||| ||||||| ||| ||   |||||||||||||| ||| ||| ||| |||||||  ||||| ||       |||||||| ||||    
T  19849240 ctatcaccaccaacatgacattttgacaaatcagtgattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaa 19849141  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatc---tttgtgagggaaaacaaaaattgacaaccaagtagt 209  Q
     |   || |||||||||||||  | ||   |||||||||||||| |||||||||||||||    ||| ||||| |||||||||| ||||||||||||||     
T  19849140 tacgatttcctctagcaagatatacag---caataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagc 19849044  T
Q  210 aaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||    
T  19849043 aagaaatgcttcatgttcaatttcactacctttatcaatgaaaata 19848998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 252
Target Start/End: Complemental strand, 26647146 - 26647015
Alignment:
Q  118 ttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 217  Q
    ||||||||||||||||||| ||   |||||||||||||| ||||||||||||||| |   ||||| |||||| ||| |||||||||||||| ||||||||    
T  26647146 ttccctctagcaagatgaacag---caataggaaacaaacaacttttcaccaaatttagatgaggaaaaacataaactgacaaccaagtagaaaggaatg 26647050  T
Q  218 cttcatgttcaatttcactaactttatcaatgaaa 252  Q
    |||||||||||||||||||| ||||||| ||||||    
T  26647049 cttcatgttcaatttcactacctttatccatgaaa 26647015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 26653399 - 26653160
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    |||||||||||||| | ||||||||| |||||||| |||||||||||||| ||| | |  || |||||||| ||||| ||       ||||| || ||||    
T  26653399 ctatcaccaccaacataatattttgacaaaccaacaattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaagcaa 26653300  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   || |||||||||||||||| ||   |||||| ||||||| |||||||||| || ||| | ||||| ||||||||||||||||||||||  | |||    
T  26653299 taggatttcctctagcaagatgaacag---caatagaaaacaaagaacttttcactaattctatatgaggaaaaacaaaaattgacaaccaagctgcaag 26653203  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    |||||| |||||||||||||||||| |||  ||||||||||||    
T  26653202 gaatgcatcatgttcaatttcactaccttagtcaatgaaaata 26653160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 19818804 - 19818566
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||||||   ||||||||| ||| |||||||| |||||||||| ||||||| ||||||||| ||| |||||||       ||||| || ||||    
T  19818804 ctatcaccaccaacagaatattttgacaaatcaactatttttttcttaaacaaacttaaatctttataaatgttagccaaaacagccggtgccaaagcaa 19818705  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   |||||||||||||||| || ||   ||| |||||||| | || ||||||||||||  || ||||| |||||||||||||| |||||||||| |||    
T  19818704 taggattccctctagcaagattaacag---caacaggaaacagataatttttcaccaaattcttatgaggaaaaacaaaaattgataaccaagtagcaag 19818608  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaat 254  Q
     || |||||||||||||||||  || ||||| |||| |||||    
T  19818607 aaaagcttcatgttcaatttcggtacctttaccaataaaaat 19818566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 19951371 - 19951132
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||| || ||||||||||| ||| |||| |||| ||| ||||| ||| ||| ||| |||||||||||||| ||       || || || ||||    
T  19951371 ctatcaccacccacatgatattttgacaaatcaacaattgcttttttaaacaaagttaaatccttatatatgctagctaaaacagctggagccaaagcaa 19951272  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   || |||||||||||||||||||   ||||||| | | || ||||  ||||||| |  || | ||| |||||||||| |||||||||||||  |||    
T  19951271 taggatttcctctagcaagatgaatag---caataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaagtgacaaccaagtaacaag 19951175  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||| ||||||||||||||||||||| |||||||| ||||||||    
T  19951174 gaaggcttcatgttcaatttcactacctttatcagtgaaaata 19951132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 24840007 - 24840084
Alignment:
Q  178 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||||||| ||||||| |||||||||    
T  24840007 tgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaata 24840084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 253
Target Start/End: Complemental strand, 19853731 - 19853522
Alignment:
Q  44 caactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaagatgaataggcgc 143  Q
    |||| ||| |||||||||| ||||| | ||| ||||||| |||||||||       ||||| || |||| | | || |||||||||||| ||||||   |    
T  19853731 caacaatttttttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcaatagtattacctctagcaagacgaatag---c 19853635  T
Q  144 aataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaact 240  Q
    ||||||||||||| | |||||||| | |   | | | ||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||    
T  19853634 aataggaaacaaagatcttttcacaataaagtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacct 19853535  T
Q  241 ttatcaatgaaaa 253  Q
    ||| ||| |||||    
T  19853534 ttaccaaagaaaa 19853522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 19858151 - 19858080
Alignment:
Q  184 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||| |||||||||    
T  19858151 aaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaata 19858080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 19943792 - 19943728
Alignment:
Q  191 aaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||    
T  19943792 aaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaata 19943728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 19989599 - 19989532
Alignment:
Q  186 aacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaa 253  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| |||| || |||||||||||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaa 19989532  T

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Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 19838472 - 19838380
Alignment:
Q  184 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttcta 276  Q
    |||||||||||||||||||||||||  || || ||||||||||||||||| ||| ||||||| |||||||||  ||||  || ||||||||||    
T  19838472 aaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccatagtgatgttcta 19838380  T

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Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 1717461 - 1717230
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||| ||||||||  |||||||||| ||||||||||||||||||||||| ||| ||| ||| |||||||||||||| ||       ||||| || ||||    
T  1717461 ctatcgccaccaacaggatattttgacaaaccaactattgttttcttaaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaa 1717362  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   || |||||||||||||||| ||   |||||||||||||| |  ||||||||||| |||| ||||| |||||| |||  ||||||||||||| |||    
T  1717361 taggatttcctctagcaagatgaacag---caataggaaacaaagattttttcaccaaagctttatgaggaaaaacataaaccgacaaccaagtagcaag 1717265  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaa 247  Q
     |||||||||||||||||||||||| |||||||||    
T  1717264 aaatgcttcatgttcaatttcactacctttatcaa 1717230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 9815265 - 9815047
Alignment:
Q  32 attttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaag 131  Q
    ||||||| |||  |||||||||||||||||| ||||||| ||| ||||| || ||||| ||       ||||| || |||| |   || |||||||||||    
T  9815265 attttgacaaattaactattgttttcttaaacaaacttaaatcgttataaatactagctaaaacagctggtgccaaagcaatagaatttcctctagcaag 9815166  T
Q  132 atgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt 231  Q
    ||||||||   |||||| ||||||| ||||||||||||||  ||| ||||  |||||||| ||||||||||| |||| || ||| |||||||| ||||||    
T  9815165 atgaatag---caatagaaaacaaagaacttttcaccaaagatttatgagttaaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaatt 9815069  T
Q  232 tcactaactttatcaatgaaaa 253  Q
    |||||| |||| || |||||||    
T  9815068 tcactacctttgtcgatgaaaa 9815047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 253
Target Start/End: Original strand, 26354903 - 26355035
Alignment:
Q  121 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaa-atc--tttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 217  Q
    |||||||||||||||||||   |||||||||||||| ||||||||||||| ||   |||   ||| |||||||||||||| ||||||| |  || |||||    
T  26354903 cctctagcaagatgaatag---caataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatg 26354999  T
Q  218 cttcatgttcaatttcactaactttatcaatgaaaa 253  Q
    |||||||||||| ||||||| ||||||| |||||||    
T  26355000 cttcatgttcaacttcactacctttatccatgaaaa 26355035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 22652127 - 22652198
Alignment:
Q  184 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||    
T  22652127 aaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaata 22652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 22685656 - 22685778
Alignment:
Q  118 ttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 217  Q
    ||||||||||||||||||||||   |||| ||||||| | || |||||||||||  ||| ||||| |||||||||| ||||||||||| || ||| ||||    
T  22685656 ttccctctagcaagatgaatag---caatcggaaacatagaagttttcaccaaaattttatgaggaaaaacaaaaagtgacaaccaagcagcaagaaatg 22685752  T
Q  218 cttcatgttcaatttcactaacttta 243  Q
    ||||||| |||||||||||| |||||    
T  22685753 cttcatgctcaatttcactaccttta 22685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 253
Target Start/End: Original strand, 22689564 - 22689763
Alignment:
Q  54 tttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaagatgaataggcgcaataggaaac 153  Q
    ||||||||| ||||| | ||| |||||||||||||||||       ||||| || |||| | | || |||||||| ||||||||||    ||||| ||||    
T  22689564 tttcttaaacaaactcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagccagatgaataga---aatagtaaac 22689660  T
Q  154 aaaaaacttttcaccaa---atctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatga 250  Q
    ||| ||||||| ||| |   || ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||| || | ||||| ||||    
T  22689661 aaagaacttttgaccgacatatttttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatga 22689760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 12581529 - 12581424
Alignment:
Q  123 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca 222  Q
    ||||||||||| |||||   |||||| ||||||| ||||||||||||  | | |  |||| ||||||||||||||||||||||||| |||||| ||||||    
T  12581529 tctagcaagattaatag---caatagaaaacaaataacttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttca 12581433  T
Q  223 tgttcaatt 231  Q
    |||||||||    
T  12581432 tgttcaatt 12581424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 12497346 - 12497241
Alignment:
Q  123 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca 222  Q
    ||||||||||| |||||   |||||| ||||||| ||||| ||||||  | | | ||||| |||||||||||||||||||| |||| |||||| ||||||    
T  12497346 tctagcaagattaatag---caatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttca 12497250  T
Q  223 tgttcaatt 231  Q
    |||||||||    
T  12497249 tgttcaatt 12497241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 12521211 - 12521106
Alignment:
Q  123 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca 222  Q
    ||||||||||| |||||   |||||| ||||||| ||||| ||||||  | | | ||||| |||||||||||||||||||| |||| |||||| ||||||    
T  12521211 tctagcaagattaatag---caatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttca 12521115  T
Q  223 tgttcaatt 231  Q
    |||||||||    
T  12521114 tgttcaatt 12521106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 12519825 - 12519878
Alignment:
Q  178 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt 231  Q
    ||||| |||||||||||||||||||||||   |||||| |||||||||||||||    
T  12519825 tgaggaaaaacaaaaattgacaaccaagttaaaaggaaggcttcatgttcaatt 12519878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 12580114 - 12580167
Alignment:
Q  178 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt 231  Q
    ||||| ||||||||||||||||||||||||  |||||| || ||||||||||||    
T  12580114 tgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgttcaatt 12580167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 12581632 - 12581560
Alignment:
Q  20 caccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaa 92  Q
    |||||||  |||||||||| | | |||  |||||||||||||||||| ||| ||| |||| ||||||||||||    
T  12581632 caccaacaagatattttgacagatcaataattgttttcttaaataaagttaaatccttatttatgctagccaa 12581560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 6397749 - 6397844
Alignment:
Q  156 aaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaa 251  Q
    ||||||||||||||  | |||  |||| ||| || ||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||| |||||    
T  6397749 aaaacttttcaccatttttttaggaggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaa 6397844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 6398382 - 6398280
Alignment:
Q  142 gcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactt 241  Q
    ||||||| ||||||| ||||||||||||    |||   ||| |||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |||    
T  6398382 gcaatagaaaacaaacaacttttcaccattgttttactaggaaaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatttcactacctt 6398283  T
Q  242 tat 244  Q
    |||    
T  6398282 tat 6398280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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