View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_high_65 (Length: 298)

Name: NF20783_high_65
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_high_65
NF20783_high_65
[»] chr3 (4 HSPs)
chr3 (149-282)||(35188905-35189038)
chr3 (1-117)||(35189071-35189187)
chr3 (149-230)||(3861150-3861231)
chr3 (160-205)||(49019534-49019579)
[»] chr1 (2 HSPs)
chr1 (149-235)||(5242576-5242662)
chr1 (158-230)||(37306351-37306423)
[»] chr7 (2 HSPs)
chr7 (149-225)||(46135143-46135219)
chr7 (149-230)||(37587446-37587527)
[»] chr5 (2 HSPs)
chr5 (149-225)||(1554767-1554843)
chr5 (149-205)||(9102340-9102396)
[»] chr6 (2 HSPs)
chr6 (149-224)||(8001329-8001404)
chr6 (158-216)||(20473497-20473555)
[»] chr2 (5 HSPs)
chr2 (150-224)||(13467436-13467510)
chr2 (149-225)||(4639993-4640069)
chr2 (149-225)||(34099066-34099142)
chr2 (149-216)||(9483989-9484056)
chr2 (150-229)||(13464697-13464776)
[»] chr4 (4 HSPs)
chr4 (149-223)||(50091284-50091358)
chr4 (149-230)||(36280257-36280338)
chr4 (151-213)||(11942579-11942641)
chr4 (174-222)||(10065288-10065336)
[»] chr8 (4 HSPs)
chr8 (158-223)||(15282133-15282198)
chr8 (158-223)||(15462502-15462567)
chr8 (150-212)||(15311441-15311503)
chr8 (150-212)||(15491810-15491872)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 149 - 282
Target Start/End: Complemental strand, 35189038 - 35188905
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgtaaatttggtatttaatat 248  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35189038 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagcttcttgtgaatttggtatttaatat 35188939  T
Q  249 attatatattttgtgtgttaatattaaaaaatgt 282  Q
    ||||||||||||||||||||||||||||||||||    
T  35188938 attatatattttgtgtgttaatattaaaaaatgt 35188905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 35189187 - 35189071
Alignment:
Q  1 tttgagttgtcgtttgatgatgttaagttaatgttcatgtttccctccctccgcaaaatcatcgttggggtctccccaataatccaagtgagcacgtgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35189187 tttgagttgtcgtttgatgatgttaagttaatgttcatgtttccctccctccgcaaaatcatcgttggggtctccccaataatccaagtgagcacgtgga 35189088  T
Q  101 attgtctgtgcaaaaca 117  Q
    |||||||||||||||||    
T  35189087 attgtctgtgcaaaaca 35189071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 3861150 - 3861231
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgt 230  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||    
T  3861150 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctgcttgt 3861231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 49019534 - 49019579
Alignment:
Q  160 gagagttgaactcaagacctcccacttactaaacgggtgctctaac 205  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  49019534 gagagttgaactcaagacctcccgcttactaaacaggtgctctaac 49019579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 5242662 - 5242576
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgtaaatt 235  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  5242662 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctgcttgttaatt 5242576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 37306423 - 37306351
Alignment:
Q  158 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgt 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||    
T  37306423 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttgt 37306351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 46135219 - 46135143
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 225  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46135219 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctt 46135143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 37587446 - 37587527
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgt 230  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||    
T  37587446 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctttttgt 37587527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 1554843 - 1554767
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 225  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1554843 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctt 1554767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 9102396 - 9102340
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaac 205  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9102396 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaac 9102340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 8001404 - 8001329
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 224  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8001404 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 8001329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 20473497 - 20473555
Alignment:
Q  158 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 216  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20473497 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 20473555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 13467436 - 13467510
Alignment:
Q  150 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 224  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13467436 tgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 13467510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 4639993 - 4640069
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 225  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  4639993 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 4640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 34099142 - 34099066
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 225  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  34099142 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 34099066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 9483989 - 9484056
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 216  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9483989 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 9484056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 13464697 - 13464776
Alignment:
Q  150 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttg 229  Q
    |||||||||| | ||||||| |||||||||||| ||||||||||  |||||||||||||||||||||| |||||||||||    
T  13464697 tgctctcgttaaaagttgaattcaagacctcccgcttactaaacaagtgctctaaccaactgagctacaagagcttcttg 13464776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 50091358 - 50091284
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 223  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  50091358 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacaggtgctctaaccaactgagctacgagagc 50091284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 36280338 - 36280257
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgt 230  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  36280338 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttcttgt 36280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 11942579 - 11942641
Alignment:
Q  151 gctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgag 213  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  11942579 gctctcgttgagagtcgaactcaagacgtcccgcttactaaacgggtgatctaaccaactgag 11942641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 10065336 - 10065288
Alignment:
Q  174 agacctcccacttactaaacgggtgctctaaccaactgagctacgagag 222  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  10065336 agacctcccgcttactaaacgggtgctctaaccaaatgagctacgagag 10065288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 15282133 - 15282198
Alignment:
Q  158 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 223  Q
    |||||||||||| |||| |||||||| ||| |||||  ||||||||||||||||| |||| |||||    
T  15282133 ttgagagttgaattcaaaacctcccatttattaaacaagtgctctaaccaactgaactaccagagc 15282198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 15462502 - 15462567
Alignment:
Q  158 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 223  Q
    |||||||||||| |||| |||||||| ||| |||||  ||||||||||||||||| |||| |||||    
T  15462502 ttgagagttgaattcaaaacctcccatttattaaacaagtgctctaaccaactgaactaccagagc 15462567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 15311441 - 15311503
Alignment:
Q  150 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactga 212  Q
    |||||||||||||||||||| |||| ||||| | || | ||||||| | ||||||||||||||    
T  15311441 tgctctcgttgagagttgaattcaaaacctctcgctcattaaacggattctctaaccaactga 15311503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 15491810 - 15491872
Alignment:
Q  150 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactga 212  Q
    |||||||||||||||||||| |||| ||||| | || | ||||||| | ||||||||||||||    
T  15491810 tgctctcgttgagagttgaattcaaaacctctcgctcattaaacggattctctaaccaactga 15491872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University