View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_70 (Length: 289)
Name: NF20783_high_70
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 23989393 - 23989132
Alignment:
| Q |
1 |
ctacattcaaccgatcctcctttgaaacttcacataacatatcgtcgtaatgatcctcctcactcatctgatcatcctcatattcattctgttgatgctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989393 |
ctacattcaaccgatcctcctttgaaacttcacataacatatcgtcgtaatgatcctcctcactcatctgatcatcctcatattcattctgttgatgctc |
23989294 |
T |
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| Q |
101 |
aggtgaatcatcatacaactgatcctcatgcatatctccattcttctgattctcaaccgaattctacacat-nnnnnnntaataagttaatgagaccaca |
199 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23989293 |
aggtgaatcatcatacaactgatcctcatgcgtatctccattcttctgattctcaaccgaattctacacataaaaataataataagttaatgagaccaca |
23989194 |
T |
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| Q |
200 |
tcatcattaattatcataaccataataagcaacgaagaacaattttaaacaaagaataatct |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989193 |
tcatcattaattatcataaccataataagcaacgaagaacaattttaaacaaagaataatct |
23989132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 23982612 - 23982442
Alignment:
| Q |
4 |
cattcaaccgatcctcctttgaaacttcacataacatatcgtcgtaatgatcctcctcactcatctgatcatcctcatattcattctgttgatgctcagg |
103 |
Q |
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||||||||||| | || ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23982612 |
cattcaaccgaccgtcgtttgaaacttcgcataacatatcctcataatgatcctcatcactcatctgatcatcctcatcttcattctgttgatgctcagg |
23982513 |
T |
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| Q |
104 |
---tgaatcatcatacaactgatcctcatgcatatctccattcttctgattctcaaccgaattctacacat |
171 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |
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| T |
23982512 |
tactgaatcatcatacaactgatcctcatgcatatccccattcttcagattcacaaccgaattctacacat |
23982442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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