View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_74 (Length: 280)
Name: NF20783_high_74
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_74 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 33859840 - 33860100
Alignment:
| Q |
1 |
taaagaaaaatgcaagagcagattcgctaggcaagcatcaatttgtcaagctaatcatggtggtttgatgacttgattggatgagctatcattttcctcc |
100 |
Q |
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| T |
33859840 |
taaagcaaaatgcaagagcagattcgctaagcaagcatcaatttgccaagctaatcatggtggtttgatgacttgattggatgagctatcattttcctcc |
33859939 |
T |
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| Q |
101 |
atctgaagaaagctcagattctctacacgagcataactttgtctatcgacttcccacttataagaattctataaatagatgtcaccacttcttttcaagg |
200 |
Q |
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| T |
33859940 |
atctgaagaaagctcagattctctacacgaacataactttgtctatcgaattcccacttataagaattctataaatagatgtcaccacttcttttcaagg |
33860039 |
T |
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| Q |
201 |
aggagtcatacaccatagaagaactcataaaccaagaaagggagagacaaaatgatctagg |
261 |
Q |
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| T |
33860040 |
aggagtcatacaccatagaagaactcataaaccaagaaagggagagacaaaatgatctagg |
33860100 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 31263 - 31221
Alignment:
| Q |
79 |
ggatgagctatcattttcctccatctgaagaaagctcagattc |
121 |
Q |
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| T |
31263 |
ggatgagctatcactttcctccatttaaagaaagctcagattc |
31221 |
T |
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