View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_8 (Length: 592)
Name: NF20783_high_8
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 175 - 576
Target Start/End: Complemental strand, 9455862 - 9455460
Alignment:
| Q |
175 |
cgagcctctgaactgtttgtgacacacacccaaactgaaatctcttggcatctttgtattatgctttgaatcttcaataagctggaaaatggtggagttc |
274 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9455862 |
cgagcctctgaactgtttgtgacacacacccaaactgaaatctcttggcatctttgtattatgctttgaatcttcaataagctggaaaatggtgaagttc |
9455763 |
T |
|
| Q |
275 |
tgggcttggtccttcggattgatgaaggacgtttcagtcttgaaaggcaaaagaacagtatataggttgtgtgaccatgttgggacgacggctctcttgg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9455762 |
tgggcttggtccttcggattgatgaaggacgtttcagtcttgaaaggaaaaagaacagtatataggttgtgtgaccatgttgggacgacggctctcttgg |
9455663 |
T |
|
| Q |
375 |
ccccatatttactctttttaagtgtataaaacaacgtttgggagatatctcccaaagggtttctaagcac-nnnnnnntaagtcgtccggaggttacgaa |
473 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
9455662 |
ccacatatttactctttttaagtgtatacaacaacgtttgggagatatctcccaaagggtttctaagcacaaaaaaaataagtcgtccggaagttacgaa |
9455563 |
T |
|
| Q |
474 |
ccaaataactttgaggnnnnnnngcaaaattcccacgttggaaggggtaacatttggcctattgtgggctcttgagctagtctaggagatggaatataaa |
573 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9455562 |
ccaaataactttgaggaaaaaaagcaaaattcccacgttggaaggggtaacatttggcctattgtgggctcttgagctagtctaggagatggaatataaa |
9455463 |
T |
|
| Q |
574 |
aac |
576 |
Q |
| |
|
||| |
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|
| T |
9455462 |
aac |
9455460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 9457450 - 9457285
Alignment:
| Q |
14 |
aacctgtgtgcaaataattactgtttatcagcaaacaatattcaacaagcatgaaaatggaacctaatatggaaaatgcaaatccctcatagagttaaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9457450 |
aacctgtgtgcaaataattactgtttatcagcaaacaatattcaacaagcatgaaaatggaacctaatatggaaaatgcaaatccctcatagagttaaat |
9457351 |
T |
|
| Q |
114 |
aattttcatgtcagcaactgtagagattttttatttctccaatccaatggtgtatagtgttcgagc |
179 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9457350 |
aattttcatgtcagcaactgtagagattttttatttctccaatccaatggtgtatagtgttcgagc |
9457285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 9461547 - 9461382
Alignment:
| Q |
14 |
aacctgtgtgcaaataattactgtttatcagcaaacaatattcaacaagcatgaaaatggaacctaatatggaaaatgcaaatccctcatagagttaaat |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9461547 |
aacctgtgtgcaaataattactgtttatcagcaaacaatattcaacaagcatgaaaatggaacctaatatggaaaatgcaaatccctcatagagttaaat |
9461448 |
T |
|
| Q |
114 |
aattttcatgtcagcaactgtagagattttttatttctccaatccaatggtgtatagtgttcgagc |
179 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9461447 |
aattttcatgtcagcaactgtagagattttttatttctccaatccaatggtgtatagtgttcgagc |
9461382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 259 - 576
Target Start/End: Complemental strand, 9434984 - 9434672
Alignment:
| Q |
259 |
gaaaatggtggagttctgggcttggtccttcggattgatgaaggacgtttcagtcttgaaaggcaaaagaacagtatataggttgtgtgaccatgttggg |
358 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |
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| T |
9434984 |
gaaaatggttaagttctgggcttggtccttcgggatgatgaaggacttttcagtcttgaaaggaaaaagaaccgtata--ggttgtgttaccatgttggg |
9434887 |
T |
|
| Q |
359 |
acgacggctctcttggccccatatttactctttttaagtgtataaaacaacgtttgggagatatctcccaaagggtttctaagcacnnnnnnntaagtcg |
458 |
Q |
| |
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|||||||| || |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||| ||| |||| || |
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| T |
9434886 |
acgacggc-cttttggccccatatttactctttttacgtgtatgcaacaacgtttgggagatatatcccgaagggtttctaaacacaaaaaaataagccg |
9434788 |
T |
|
| Q |
459 |
tccggaggttacgaaccaaataactttgagg--nnnnnnngcaaaattcccacgttggaaggggtaacatttggcctattgtgggctcttgagctagtct |
556 |
Q |
| |
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|||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9434787 |
tccggaagttaccaaccgaataactttgaggaaaaaaaaggcaaaattcccacgttggaaggggtaacatttggcctattgtgggctcttgagct----t |
9434692 |
T |
|
| Q |
557 |
aggagatggaatataaaaac |
576 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
9434691 |
aggagatggaatttaaaaac |
9434672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 9487277 - 9487100
Alignment:
| Q |
22 |
tgcaaataattactgtttatcagcaaacaatattcaacaagcatgaaaatggaacctaatatggaaaatgcaaatccctcatagagttaaataattttca |
121 |
Q |
| |
|
|||||||||||||| ||| |||| ||||| ||| |||||||||| |||||||||| ||||||||||||||||||| | | |||| | |||||||||||| |
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| T |
9487277 |
tgcaaataattactatttttcagaaaacattatgcaacaagcatcaaaatggaacgtaatatggaaaatgcaaatacttgctagaatcaaataattttca |
9487178 |
T |
|
| Q |
122 |
tgtcagcaactgtagagattttttatttctccaatccaatggtgtatagtgttcgagcctctgaactgtttgtgacac |
199 |
Q |
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||||||||| |||||||||| |||| |||| ||||||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
9487177 |
tgtcagcaattgtagagattgtttacttcttcaatccaatggtgtacagtgcttgagcctctgaactgtttgtgacac |
9487100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 9435033 - 9434977
Alignment:
| Q |
17 |
ctgtgtgcaaataattactgtttatcagcaaacaatattcaacaagcatgaaaatgg |
73 |
Q |
| |
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|||| |||||||||||||| ||| | ||||||||||| ||||||||||||||||||| |
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| T |
9435033 |
ctgtatgcaaataattactattttttagcaaacaatagtcaacaagcatgaaaatgg |
9434977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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