View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_high_84 (Length: 262)
Name: NF20783_high_84
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_84 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 48705317 - 48705554
Alignment:
| Q |
1 |
ttagtaagaattaccgtgtgcagctgcagcgacgacgtccctatgagaatcccttacgatgagttgaattctggttttgtaatgagaatgagagagatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48705317 |
ttagtaagaattaccgtgtgcagctgcagcgacgacgtccctatgagaatcccttacgatgagttgaattctggttttgtaatgagaatgagagagatag |
48705416 |
T |
|
| Q |
101 |
aaatctgagagtgacatgtttatgcagctcaatcctatcttcccaaccgtttcattactgctaatatcaattacagctcccactttcactacaatattac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48705417 |
aaatctgagagtgacatgtttatgcagctcaatcctatcttcccaaccgtttcattactgctaatatcaattacagctcccactttcactacaatattac |
48705516 |
T |
|
| Q |
201 |
tttcatttttagtaatttgtgccaatattccacccaaaaga |
241 |
Q |
| |
|
||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
48705517 |
tttcattct---tactttgtgccaatattccacccaaaaga |
48705554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 48715307 - 48715551
Alignment:
| Q |
1 |
ttagtaagaattaccgtgtgcagctgcagcgacgacgtccctatgagaatcccttacgatgagttgaattctggttttgtaatgagaatgagagagatag |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||| |||||||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48715307 |
ttagtaataattaccgtgtgcagcggcagagacgacgtccttatgggaatccctaaggatgagttgaattctggttttgtaatgagaatgagaaagatag |
48715406 |
T |
|
| Q |
101 |
aaatctgagagtgacatgtttatgcagctcaatcctatcttcccaaccgtttcattactgctaatatcaattacagctcccactttcactacaatattac |
200 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48715407 |
aaatctgaaagagacatgtttatgcagctcaatcctattttcccaaccgttccattactgctaacatcaattacagctcccactttcactacaatattac |
48715506 |
T |
|
| Q |
201 |
tttcatttttagtaatttgtgccaatattccacccaaaagaataa |
245 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48715507 |
tctcatttttagtaatttgtgccaatattccacccaaaagaataa |
48715551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 51164776 - 51164832
Alignment:
| Q |
119 |
tttatgcagctcaatcctatcttcccaaccgtttcattactgctaatatcaattaca |
175 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||| ||||||||| || |||||||||| |
|
|
| T |
51164776 |
tttatgcagctcaatcctattttcctaactgttccattactgccaacatcaattaca |
51164832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University