View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_87 (Length: 255)
Name: NF20783_high_87
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_87 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23989609 - 23989370
Alignment:
| Q |
1 |
aaaacaattttagaacatgcatatgaattaaattgggttagaaaagttagatatacatcatgtgacatacccttttaagagatgagaccgggaaacaact |
100 |
Q |
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| T |
23989609 |
aaaacaattttagaacatgcatatgaattaaattgggttagagaagttagatatacatcatgtgacatacccttttaagagatgagaccgggaaacaact |
23989510 |
T |
|
| Q |
101 |
gtaaacatgttcaaagatctcattgtgcagtccgttccatagatactcattgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989509 |
gtaaacatgttcaaagatctcattgtgcagtccgttccatagatactcattgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcac |
23989410 |
T |
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| Q |
201 |
tgaccctcgatcgaaactacattcaaccgatcctcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
23989409 |
tgaccctcgatcgaaactacattcaaccgatcctcctttg |
23989370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 23982927 - 23982708
Alignment:
| Q |
1 |
aaaacaattttagaacatgcatatgaattaaattgggttagaaaagttagatatacatcatgtgacatacccttttaagagatgagaccgggaaacaact |
100 |
Q |
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||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
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| T |
23982927 |
aaaaccattttaaaacacgcatatgaattaaattgggttagagaagttagatatacatcatgtgacatacccttttaagagacgagattggtaaacaact |
23982828 |
T |
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| Q |
101 |
gtaaacatgttcaaagatctcattgtgcagtccgttccatagatact---cattgtaatcatcattccacccgtgatgatcctcatacaaattctcattg |
197 |
Q |
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| T |
23982827 |
gtaaaattgttcaaaggtctcatcaggcagtgcgttccatagatccttaacaaaatcatcatcgttccacccatgatgttcctcatgcaaattctcattc |
23982728 |
T |
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| Q |
198 |
cactgaccctcgatcgaaac |
217 |
Q |
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||||||||||| || ||||| |
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| T |
23982727 |
cactgaccctcaattgaaac |
23982708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 23965601 - 23965494
Alignment:
| Q |
20 |
catatgaattaaattgggttagaaaagttagatatacatcatgtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatc |
119 |
Q |
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|||| |||| ||||||||||||| ||||||||||| ||| | |||||||||||| || ||||||||||| | |||||||||||||||||||||||||||| |
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| T |
23965601 |
cataagaatgaaattgggttagagaagttagatatgcataaggtgacataccctattcagagatgagacagagaaacaactgtaaacatgttcaaagatc |
23965502 |
T |
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| Q |
120 |
tcattgtg |
127 |
Q |
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|||||||| |
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| T |
23965501 |
tcattgtg |
23965494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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