View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_high_91 (Length: 252)

Name: NF20783_high_91
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_high_91
NF20783_high_91
[»] chr4 (3 HSPs)
chr4 (18-244)||(16390209-16390435)
chr4 (62-138)||(10723393-10723469)
chr4 (62-138)||(10937162-10937238)
[»] chr7 (1 HSPs)
chr7 (19-142)||(16208880-16209003)
[»] chr5 (1 HSPs)
chr5 (29-141)||(22405762-22405874)
[»] scaffold0046 (2 HSPs)
scaffold0046 (21-142)||(3132-3253)
scaffold0046 (100-142)||(22844-22886)
[»] scaffold0037 (1 HSPs)
scaffold0037 (18-142)||(111258-111382)
[»] chr6 (2 HSPs)
chr6 (30-142)||(25803661-25803773)
chr6 (22-142)||(12040681-12040801)
[»] chr3 (2 HSPs)
chr3 (38-142)||(18035895-18035999)
chr3 (183-240)||(1996584-1996641)
[»] scaffold0226 (1 HSPs)
scaffold0226 (78-142)||(8538-8602)
[»] chr2 (1 HSPs)
chr2 (76-142)||(21529461-21529527)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 16390209 - 16390435
Alignment:
Q  18 cagagacttagtcatgtcttcatcatcttcttgatttacctgtaactcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattc 117  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  16390209 cagagacttagtcatgtcttcgtcatcttcttgatttacttgtaactcatcaagctctacactagatgcaaaaacaatccctttacccttcttatcattc 16390308  T
Q  118 ttactattgacagttatttcaaaatatgtgatagttttgcttatattcacttataattttgggagtaatattattagcaattacagatgagtttgactct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16390309 ttactattgacagttatttcaaaatatgtgatagttttgcttatattcacttataattttgggagtaatattattagcaattacagatgagtttgactct 16390408  T
Q  218 ttgaaaggttgttgagctcatttttgt 244  Q
    |||||||||||||||||||||||||||    
T  16390409 ttgaaaggttgttgagctcatttttgt 16390435  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 10723393 - 10723469
Alignment:
Q  62 actcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattcttactattgacagttatttca 138  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||| | ||  | |||||||||||||||    
T  10723393 actcatcaagctctacactagatgcaaaagcaatccccttgctcttcttatcagttttgttgttgacagttatttca 10723469  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 10937162 - 10937238
Alignment:
Q  62 actcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattcttactattgacagttatttca 138  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||| | ||  | |||||||||||||||    
T  10937162 actcatcaagctctacactagatgcaaaagcaatccccttgctcttcttatcagttttgttgttgacagttatttca 10937238  T

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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 16209003 - 16208880
Alignment:
Q  19 agagacttagtcatgtcttcatcatcttcttgatttacctgtaactcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattct 118  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16209003 agagactctgtcatgtcttcatcatcttcttgatttacttgtaactcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattct 16208904  T
Q  119 tactattgacagttatttcaaaat 142  Q
    ||||||||||||||||||||||||    
T  16208903 tactattgacagttatttcaaaat 16208880  T

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Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 22405874 - 22405762
Alignment:
Q  29 tcatgtcttcatcatcttcttgatttacctgtaactcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattcttactattgac 128  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  22405874 tcatgtcttcatcatcttcttgatttacttgtaactcatcaagctctacactaaatgcaaaagcaatccctttgcccttcttatcattcttactattgat 22405775  T
Q  129 agttatttcaaaa 141  Q
    |||||||||||||    
T  22405774 agttatttcaaaa 22405762  T

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Target: scaffold0046 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 3132 - 3253
Alignment:
Q  21 agacttagtcatgtcttcatcatcttcttgatttacctgtaactcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattctta 120  Q
    |||||| ||||||||||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  3132 agactttgtcatgtcttcatcatcttcttgatttacttgtaagtcatccggctctacactagatgcaaaagcaatccatttgcccttcttatgattctta 3231  T
Q  121 ctattgacagttatttcaaaat 142  Q
    ||||||||||||||||||||||    
T  3232 ctattgacagttatttcaaaat 3253  T

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Target: scaffold0046; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 22844 - 22886
Alignment:
Q  100 ttgcccttcttatcattcttactattgacagttatttcaaaat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22844 ttgcccttcttatcattcttactattgacagttatttcaaaat 22886  T

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Target: scaffold0037 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 111382 - 111258
Alignment:
Q  18 cagagacttagtcatgtcttcatcatcttcttgatttacctgtaactcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattc 117  Q
    ||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  111382 cagagactctgtcatgtcttcatcatcttcttgatttacttgtaactcatcaagctttacactagatgcaaaagcaatcccttttcctttcttatcattc 111283  T
Q  118 ttactattgacagttatttcaaaat 142  Q
    |||||| |||||| |||||||||||    
T  111282 ttactactgacagctatttcaaaat 111258  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 25803661 - 25803773
Alignment:
Q  30 catgtcttcatcatcttcttgatttacctgtaactcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattcttactattgaca 129  Q
    ||||||||||||||||||||||||| | ||| ||||||||| ||||| |||||||||||| ||||||||||| |||||||||||| ||||  | ||| |     
T  25803661 catgtcttcatcatcttcttgatttgcttgtgactcatcaatctctatactagatgcaaacgcaatccctttacccttcttatcagtcttgttgttggct 25803760  T
Q  130 gttatttcaaaat 142  Q
    |||||||||||||    
T  25803761 gttatttcaaaat 25803773  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 12040801 - 12040681
Alignment:
Q  22 gacttagtcatgtcttcatcatcttcttgatttacctgtaactcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattcttac 121  Q
    ||||||||||| |||||||||||||| ||| || | |||  |||||||   || | |||||||| ||| ||||| || |||| ||| |||||| ||||      
T  12040801 gacttagtcatatcttcatcatcttcatgaattccttgtgtctcatcagaatccatactagatgtaaaggcaatacccttgcgctttttatcagtcttgt 12040702  T
Q  122 tattgacagttatttcaaaat 142  Q
    | |||||||||||||||||||    
T  12040701 tgttgacagttatttcaaaat 12040681  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 18035999 - 18035895
Alignment:
Q  38 catcatcttcttgatttacctgtaactcatcaagctctacactagatgcaaaagcaatccctttgcccttcttatcattcttactattgacagttatttc 137  Q
    |||||||||||||| || | ||| |||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||| || || |||||||||||    
T  18035999 catcatcttcttgagtttcttgtgactcatcaggctctacactagatgcaaaagcaatccccttgccctttttatcagtcttgctgttaacagttatttc 18035900  T
Q  138 aaaat 142  Q
    |||||    
T  18035899 aaaat 18035895  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 1996641 - 1996584
Alignment:
Q  183 taatattattagcaattacagatgagtttgactctttgaaaggttgttgagctcattt 240  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||    
T  1996641 taatattattagcaattatagatgaatttgactctttaaaaggttgttgagctaattt 1996584  T

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Target: scaffold0226 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 8602 - 8538
Alignment:
Q  78 actagatgcaaaagcaatccctttgcccttcttatcattcttactattgacagttatttcaaaat 142  Q
    |||||||| ||| ||||| || || |||||||||||| ||||||| |||||| ||||||||||||    
T  8602 actagatgtaaaggcaatacccttccccttcttatcagtcttactgttgacaattatttcaaaat 8538  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 21529461 - 21529527
Alignment:
Q  76 acactagatgcaaaagcaatccctttgcccttcttatcattcttactattgacagttatttcaaaat 142  Q
    |||||| ||||||||||||| || || ||||| |||||| ||||  | |||||||||||||||||||    
T  21529461 acactacatgcaaaagcaattcccttaccctttttatcagtcttgatgttgacagttatttcaaaat 21529527  T

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