View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_high_94 (Length: 250)
Name: NF20783_high_94
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_high_94 |
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| [»] scaffold0236 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43704096 - 43703860
Alignment:
| Q |
1 |
cactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704096 |
cactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaag |
43703997 |
T |
|
| Q |
101 |
ccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43703996 |
ccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatc |
43703897 |
T |
|
| Q |
201 |
aagtgaagaaaattaaaaaacaacccaattcccattc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
43703896 |
aagtgaagaaaattaaaaaacaacccaattcccattc |
43703860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43715067 - 43714831
Alignment:
| Q |
1 |
cactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43715067 |
cactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaag |
43714968 |
T |
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| Q |
101 |
ccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714967 |
ccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatc |
43714868 |
T |
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| Q |
201 |
aagtgaagaaaattaaaaaacaacccaattcccattc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
43714867 |
aagtgaagaaaattaaaaaacaacccaattcccattc |
43714831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43687238 - 43687002
Alignment:
| Q |
1 |
cactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaag |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
43687238 |
cactagacatagtctttggaaactctttgtaataaaactcattttggccaataacattgaatgcttcagctataccagccaaacaaagttgaggtgcaag |
43687139 |
T |
|
| Q |
101 |
ccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||| | | ||||||| ||||||||||| | ||||||||||||||||| || |
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| T |
43687138 |
ccacattgcagacattttcaacactccatgagtattattcaaaaatcctgcctgtattgctttctttctccttatactctcaaaaattgctgcaactaca |
43687039 |
T |
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| Q |
201 |
aagtgaagaaaattaaaaaacaacccaattcccattc |
237 |
Q |
| |
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| |||||||||||||||||||||||||| |||||||| |
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| T |
43687038 |
atgtgaagaaaattaaaaaacaacccaagtcccattc |
43687002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 43728800 - 43728565
Alignment:
| Q |
2 |
actagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagc |
101 |
Q |
| |
|
|||||||||| || | ||||||||||||||||| || ||||| ||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
43728800 |
actagacatagtcctcggaaactctttgtaatagaattcattttggccaatagcattgaatgcttcgcttataccacccaaacaaagttgaggtgcaagc |
43728701 |
T |
|
| Q |
102 |
cacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatca |
201 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||| ||||| | | ||||||| |||||||||| | |||||||| |||||||||| || |
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| T |
43728700 |
cacaatgcagacattttcaacacgccatgagtatcattcaaaaatcctgcctgaattgctttttttctccttatactctcaaaagcagctgcagttacca |
43728601 |
T |
|
| Q |
202 |
agtgaagaaaattaaaaaacaacccaattcccattc |
237 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| |
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| T |
43728600 |
agtggagaaaatttaaaaacaacccaattcccattc |
43728565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 25274173 - 25274045
Alignment:
| Q |
1 |
cactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaag |
100 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||||||||||| ||||| || | ||||| ||| | ||||||||| | |||||||||||||||||| |
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| T |
25274173 |
cactagacatagtacttggaaactctgtgtaataaaactcattttggcctatgaaattgactgcttcagatataccagctagacaaagttgaggtgcaag |
25274074 |
T |
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| Q |
101 |
ccacattgcagacattttcaacactccat |
129 |
Q |
| |
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||||| ||| ||||||| ||||||||||| |
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| T |
25274073 |
ccacaatgccgacatttccaacactccat |
25274045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 2690833 - 2690602
Alignment:
| Q |
6 |
gacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccaca |
105 |
Q |
| |
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|||||| |||| ||||| || |||| || |||||||| ||||| ||||||||||| ||| ||||| ||| |||| ||||||||||| |||||||| |
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| T |
2690833 |
gacatagtcttgggaaattcggtgtagtagaactcattttggcctataacattgaatgcttcagctattccacccaagcaaagttgaggaaaaagccaca |
2690734 |
T |
|
| Q |
106 |
ttgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtg |
205 |
Q |
| |
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|||||||||| ||||||||| ||||| |||||| ||||||||| ||||||||| ||| ||||| |||||| | ||||| ||| |||| |||||| |
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| T |
2690733 |
ttgcagacatgttcaacactgaatgaggatcattaccatatccttcattgattgctcttcttcgccttatagtctcgacaattgatgcggttaccaagtg |
2690634 |
T |
|
| Q |
206 |
aagaaaattaaaaaacaacccaattcccattc |
237 |
Q |
| |
|
|||||| |||||||| || | |||||||| |
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| T |
2690633 |
gagaaaagagaaaaacaatccgagtcccattc |
2690602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 23555 - 23683
Alignment:
| Q |
1 |
cactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaag |
100 |
Q |
| |
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||||||||||| | ||||||||||| |||||||||||||||| ||||| || | |||| ||| | ||||||||||| ||| |||||||||||||| |
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| T |
23555 |
cactagacatagtacttggaaactctgtgtaataaaactcattttggcctatgaatttgactgcttcagatataccagccagacagagttgaggtgcaag |
23654 |
T |
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| Q |
101 |
ccacattgcagacattttcaacactccat |
129 |
Q |
| |
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||||| ||| || |||| ||| ||||||| |
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| T |
23655 |
ccacaatgccgaaatttccaaaactccat |
23683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 23696 - 23767
Alignment:
| Q |
166 |
ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattc |
237 |
Q |
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||||||||| ||||||||||||||||||| ||| ||||| |||||| |||||||| ||||||||||||| |
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| T |
23696 |
ttctccttatagtctcaaaaattgctgcatttactaagtggagaaaagataaaaacaaaccaattcccattc |
23767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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