View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_10 (Length: 571)
Name: NF20783_low_10
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_10 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 269 - 571
Target Start/End: Complemental strand, 32870504 - 32870204
Alignment:
| Q |
269 |
gaaataaagcatatatattaggaggtaggacaattttttnnnnnnntgagtcgattattatgagaatgagggagtaatatataaactctatatggtggta |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
32870504 |
gaaataaagcatatatattaggaggtaggacaattgtttttacaaatgagtcggttattatgagaaggagggagtaatatataaactctat--ggtggta |
32870407 |
T |
|
| Q |
369 |
tagcacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttattaactcaaggagcacgactccataaga |
468 |
Q |
| |
|
|| |||||||||||||||||||| |||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32870406 |
taacacttacccactcaaccaaattaacgtccatgtgagggttagctttatcaatcgctactcgtccagttattaactcaaggagcacgactccataaga |
32870307 |
T |
|
| Q |
469 |
gtaaacatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattgataattcatgagcttaatatatcata |
568 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32870306 |
gtaaacatcggatttatcagtaagtcgtccagtataagcatattctggatccagatacctgtaagcagctattgataattcatgagcttaatatatcata |
32870207 |
T |
|
| Q |
569 |
aat |
571 |
Q |
| |
|
||| |
|
|
| T |
32870206 |
aat |
32870204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 32870810 - 32870523
Alignment:
| Q |
1 |
gaagaatgtcagttgaaaataaacaggtagggtaaacgataaaacaaattcttcacattaccgtgctcatcgttggtcgatcatttgctgacagacgcgt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
32870810 |
gaagaatgacagttgaaaataaacaggtagggtaaacgataaaacaaattcttcacattacctggctcatctttggtcgatcctttgctgactgacgcgt |
32870711 |
T |
|
| Q |
101 |
gcaagcttcagcgcatgctatcatacgagtcatctcattacggtcaaat---accttaagccttgaatcaaccagatgcttattttcttttaaacccctc |
197 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||| |||||||||||| ||||||||||| ||||||||||| || ||| |||||||| | | | |
|
|
| T |
32870710 |
gcaagctgcagcgcatgctaccatatgagtcatctctttacggtcaaattgcttcttaagccttggatcaaccagatcattttttccttttaaagcacgc |
32870611 |
T |
|
| Q |
198 |
ttgaaaaaaggcctagcctgt----------gatggttgtagttaaaagttagggttatgctagggtatcattcaaaagaggaaataa |
275 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32870610 |
atgaaaaaaggcctagcctgtgatgatgaaagatggttgtagttaaaagttagggttatgctagggtatcattcaaaagaggaaataa |
32870523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 343 - 564
Target Start/End: Complemental strand, 32903757 - 32903541
Alignment:
| Q |
343 |
taatatataaactctatatggtggtatagcacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttatt |
442 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||||||||||||| | | | ||| || | | ||||||||| ||||||||||||||||| | |
|
|
| T |
32903757 |
taatatataaactctctatggt-----aacacttacccactcaaccaaactatcatccatgtaagtctgatctttatcaaccggtcgtcgtccagttaat |
32903663 |
T |
|
| Q |
443 |
aactcaaggagcacgactccataagagtaaacatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattg |
542 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||| || ||||||||||||| ||||||||||||| |||| || | |
|
|
| T |
32903662 |
aactcaaggagcatgactccataagagaaaacatctgatttatcggtaagttttccactagcagcatattctggagccagatacctgtagacagcaatag |
32903563 |
T |
|
| Q |
543 |
ataattcatgagcttaatatat |
564 |
Q |
| |
|
||| |||||||||| |||||| |
|
|
| T |
32903562 |
atagctcatgagcttgatatat |
32903541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 32904046 - 32903929
Alignment:
| Q |
31 |
ggtaaacgataaaacaaattcttcacattaccgtgctcatcgttggtcgatcatttgctgacagacgcgtgcaagcttcagcgcatgctatcatacgagt |
130 |
Q |
| |
|
|||||| |||| |||||| ||||||| ||||| ||||||| |||||||| |||||||| |||| ||||||||| |||||||||| | ||||||||| |
|
|
| T |
32904046 |
ggtaaatgatataacaaactcttcactttacctggctcatctttggtcgacgctttgctgagtgacgtgtgcaagctgcagcgcatgccaccatacgagt |
32903947 |
T |
|
| Q |
131 |
catctcattacggtcaaa |
148 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
32903946 |
catctcattagggtcaaa |
32903929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 372 - 546
Target Start/End: Complemental strand, 16394745 - 16394571
Alignment:
| Q |
372 |
cacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttattaactcaaggagcacgactccataagagta |
471 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||| || ||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||| | |
|
|
| T |
16394745 |
cacttacccactcaaccaaactatcgttcatgtaagtcttatctttatcaatcggctttcgtccagttattaactcaaggagtatgactccataagagaa |
16394646 |
T |
|
| Q |
472 |
aacatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattgataa |
546 |
Q |
| |
|
|||||||||||| || |||||||||||| || | ||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
16394645 |
aacatctgatttgtctgtaagttgtccactagagacatattctggagccatatacctgtaagcagcaattgataa |
16394571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University