View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_101 (Length: 243)
Name: NF20783_low_101
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_101 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11627003 - 11626777
Alignment:
| Q |
1 |
aattaatgttaaaaagactgtactgttaaactacgacatcaagtaaatgatgtcaatctaaatttacattttacaagcacagtcaatgattttctatggt |
100 |
Q |
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| T |
11627003 |
aattaatgttaaaaagactgtactgttaaactatgacatcaagtaaatgatgtcaatctaaatttacattttacaagcacagtcaatgattttctatggt |
11626904 |
T |
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| Q |
101 |
ccaatccaagtagtgaaagtttataagcatttgaattctttctcttgaacagatttaagtttcccacctatcaacaagagaaatgattttcaataataca |
200 |
Q |
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| T |
11626903 |
ccaatccaagtagtgaaagtttataagaatttgaattctttctcttgaacagatttaagtttcccacctatcaacaagagaaatgattttcaataataca |
11626804 |
T |
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| Q |
201 |
cacacaatgttctttatttcttgaaaa |
227 |
Q |
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| T |
11626803 |
cacacaatgttctttattccttgaaaa |
11626777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 11687037 - 11687099
Alignment:
| Q |
36 |
acatcaagtaaatgatgtcaatctaaatttacattttacaagcacagtcaatgattttctatg |
98 |
Q |
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| T |
11687037 |
acatcaagttatagatgtcaatctaagtttacattttacaagcataatcaattattttctatg |
11687099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 11634730 - 11634681
Alignment:
| Q |
55 |
aatctaaatttacattttacaagcacagtcaatgattttctatggtccaa |
104 |
Q |
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| T |
11634730 |
aatctaaatttacattttacaagaataatcaatgattgtctatggtccaa |
11634681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 11691062 - 11691118
Alignment:
| Q |
39 |
tcaagtaaatgatgtcaatctaaatttacattttacaagcacagtcaatgattttct |
95 |
Q |
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|||||| || ||| ||||||||| ||||||||||||||||| | ||||||||||||| |
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| T |
11691062 |
tcaagttaaagatatcaatctaagtttacattttacaagcataatcaatgattttct |
11691118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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