View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_102 (Length: 243)
Name: NF20783_low_102
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_102 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 51845511 - 51845743
Alignment:
| Q |
11 |
cagagagtagtggaaagaaggattctaggagaggttcttcgaagagtggtggaatgggtgatcttgtaatggtgaatgatgaaaaaggtgtgtttggttt |
110 |
Q |
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| T |
51845511 |
cagaaagtagtggaaagaaggattctaggagaggttcttcgaagagtggtggaatgggtgatcttgtaatggtgaatgatgaaaaaggtgtgtttggtct |
51845610 |
T |
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| Q |
111 |
acctgatttgatgaaagctgctgctgaggttttgggaaatggtggattaggttctgcttataaagcagccatgactaatggtttatctgtggttgtgaag |
210 |
Q |
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| T |
51845611 |
acctgatttgatgaaagctgctgctgaggttttgggaaatggtggattaggttctgcttataaagcagccatgactaatggtttatctgtggttgtgaag |
51845710 |
T |
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| Q |
211 |
aggatgagggagatgaataaagtaagcagagat |
243 |
Q |
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| T |
51845711 |
aggatgagggagatgaataaagtaagcagagat |
51845743 |
T |
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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 18628566 - 18628395
Alignment:
| Q |
60 |
tggaatgggtgatcttgtaatggtgaatgatgaaaaaggtgtgtttggtttacctgatttgatgaaagctgctgctgaggttttgggaaatggtggatta |
159 |
Q |
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| T |
18628566 |
tggaataggtgatattgtgatggtgaatgatgagaagggttcatttggtttacaagatttgatgaaagctgcggcagaggttttggggaacggtggattg |
18628467 |
T |
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| Q |
160 |
ggttctgcttataaagcagccatgactaatggtttatctgtggttgtgaagaggatgagggagatgaataaa |
231 |
Q |
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| T |
18628466 |
ggatcggcttataaggccgcgatggcgaccggattgagtgtggtggtgaagagaatgagggagatgaataaa |
18628395 |
T |
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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 7666074 - 7665932
Alignment:
| Q |
67 |
ggtgatcttgtaatggtgaatgatgaaaaaggtgtgtttggtttacctgatttgatgaaagctgctgctgaggttttgggaaatggtggattaggttctg |
166 |
Q |
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| T |
7666074 |
ggtgagcttgtgatgatgaataatgagaagggtgtgtttggtttacctgatttgatgaaagcttctgctgaagttcttggaaatggagggtttggatcat |
7665975 |
T |
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| Q |
167 |
cttataaagcagccatgactaatggtttatctgtggttgtgaa |
209 |
Q |
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| T |
7665974 |
cttataaagctgtgatggctaatggtgttgctgtggttgtgaa |
7665932 |
T |
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