View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_104 (Length: 240)
Name: NF20783_low_104
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_104 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 41417983 - 41418186
Alignment:
| Q |
20 |
cgaatgacactgctgggttcatggatgctccggtgaaggctccaccaaccaaaatgttagcaccaacgatgaaaccaatagcaattggtgcaataattcc |
119 |
Q |
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| T |
41417983 |
cgaatgacactgctgggttcatggatgctccggtgaaggctccaccaaccaaaatgttagcaccaacgatgaaaccaatagcaattggtgcaataattcc |
41418082 |
T |
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| Q |
120 |
aatgttacccttctttgggtcaacggctgtagcatacactgtgtacaccaatccaaaggtcatcacaatctccaacaccaaagctggtccaactccaact |
219 |
Q |
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| T |
41418083 |
aatgttacccttctttgggtcaacggctgtagcatacactgtgtacaccaatccaaaggtcatcacaatctccaacaccaaagctggtccaactccaact |
41418182 |
T |
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| Q |
220 |
ccct |
223 |
Q |
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|||| |
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| T |
41418183 |
ccct |
41418186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 7656840 - 7656674
Alignment:
| Q |
22 |
aatgacactgctgggttcatggatgctccggtgaaggctccaccaaccaaaatgttagcaccaacgatgaaaccaatagcaattggtgcaataattccaa |
121 |
Q |
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| T |
7656840 |
aatgacacagctggattcatggatgcaccatcaaatgctccaccagctaagatatttgcaccaacaataacaccaattgcaattggagcaataattccta |
7656741 |
T |
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| Q |
122 |
tgttacccttctttgggtcaacggctgtagcatacactgtgtacaccaatccaaaggtcatcacaat |
188 |
Q |
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| T |
7656740 |
tattccctttttttggatctactgctgttgcataaactgtgtataccaatccaaatgtcatcacaat |
7656674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 23340442 - 23340273
Alignment:
| Q |
28 |
actgctgggttcatggatgctccggtgaaggctccaccaaccaaaatgttagcaccaacgatgaaaccaatagcaattggtgcaataattccaatgttac |
127 |
Q |
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|||||||||||||||||||| || || || ||||| | || |||||||| ||||| ||||||||||| |||||||| ||||| |||| | | ||| |
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| T |
23340442 |
actgctgggttcatggatgcaccatcaaatgcaccacctgctaagatgttagctccaactatgaaaccaattgcaattggagcaattgttcctaggctac |
23340343 |
T |
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| Q |
128 |
ccttctttgggtcaacggctgtagcatacactgtgtacaccaatccaaaggtcatcacaatctccaacac |
197 |
Q |
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| || |||||||| || || ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |
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| T |
23340342 |
cattttttgggtctactgcagtagcatacactgtgtaaaccaaaccaaaagtcatcacaatctcaaacac |
23340273 |
T |
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