View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_105 (Length: 240)
Name: NF20783_low_105
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_105 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 19708793 - 19708961
Alignment:
| Q |
17 |
agaacgagaaacatcctaagaggtgtgcaaaagggcaagagtaaggtattcacatccaactacaaaactcaaaaggcc-aaatcacccaaccaaatgagc |
115 |
Q |
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| T |
19708793 |
agaacgagaaacatcctaagaggtgtgcaaaagggcaagagtaaggtattcacatccaactacaaaactcaaaaggcccaaatcacccaaccaaatgagc |
19708892 |
T |
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| Q |
116 |
catatgagaaaattggtgataatacaagcatatgggaatacctagctagagttgaaggaggttttgaag |
184 |
Q |
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| T |
19708893 |
catatgagaaaattggtgataatacaagcatatgggaatacctagctagggttgaaggaggttttgaag |
19708961 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 12024433 - 12024375
Alignment:
| Q |
130 |
ggtgataatacaagcatatgggaatacctagctagagttgaaggaggttttgaagaaaa |
188 |
Q |
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| T |
12024433 |
ggtgataacacatgcatatgggaatacctagctagggatgaaggaacctttgaagaaaa |
12024375 |
T |
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