View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_12 (Length: 530)
Name: NF20783_low_12
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 76 - 512
Target Start/End: Complemental strand, 41336093 - 41335657
Alignment:
| Q |
76 |
cacctctaatttcatctctaagtataagttagaggtgtaaaaattagagatcaatttaaatannnnnnnncatctctaattactgccaataattcaactt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41336093 |
cacctctaatttcatctctaagtataagttagaggtgtaaaaattagagatcaatttaaatattttttttcatctctaattactgccaataattcaactt |
41335994 |
T |
|
| Q |
176 |
tttctagcagtgcaaatgatgaaagttataacagacgactagccgaagaagatgcaagaccatgaaaatcattccatgaattattgtaatggttgttatt |
275 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41335993 |
tttctagcagtgcaaacgatgaaagttataacagacgactagccgaagaagatgcaagaccatgaaaatcattccatgaattattgtaatggttgttatt |
41335894 |
T |
|
| Q |
276 |
ctctgacatattcattggagatctaagcagattaaaacctccgttgtgttccgatttaaccgatgcaggcatcaaagtagtaaccctagaagtagttgtt |
375 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41335893 |
ctctgacatattcattggagatctaagaagattaaaacctccgttgtgttccgatttaaccgatgcaggcatcaaagtagtaaccctagaagtagttgtt |
41335794 |
T |
|
| Q |
376 |
ggttcaacaatttcactttgaaatgggaaagaaacatttgaagtacttgaatcaaagccattattcatgaaaggaaactgctgaaatctccactgatcga |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41335793 |
ggttcaacaatttcactttgaaatgggaaagaaacatttgaagtacttgaatcaaagccattattcatgaaaggaaactgctgaaatctccactgatcga |
41335694 |
T |
|
| Q |
476 |
caactcctccttctcctccaccagtagttgaactata |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41335693 |
caactcctccttctcctccaccagtagttgaactata |
41335657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University