View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_low_130 (Length: 212)

Name: NF20783_low_130
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_low_130
NF20783_low_130
[»] chr5 (4 HSPs)
chr5 (6-212)||(29594933-29595139)
chr5 (38-95)||(7807052-7807109)
chr5 (13-73)||(29595548-29595608)
chr5 (14-77)||(7806457-7806522)
[»] chr8 (2 HSPs)
chr8 (19-212)||(33322020-33322211)
chr8 (20-73)||(33321538-33321591)
[»] chr7 (2 HSPs)
chr7 (13-110)||(3315380-3315477)
chr7 (13-82)||(3314989-3315058)
[»] chr6 (1 HSPs)
chr6 (38-95)||(8554469-8554526)
[»] chr1 (2 HSPs)
chr1 (38-95)||(11938370-11938427)
chr1 (13-77)||(11937733-11937799)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 29594933 - 29595139
Alignment:
Q  6 aagttcatcaccggtgtaccactttatttgatcattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatatttcatcttca 105  Q
    |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29594933 aagttcttcaccgatgtaccactttatttggtcattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatatttcatcttca 29595032  T
Q  106 caacccagttctttctcttgcctaaataggtcttatttcgcccaacactcaatcgaaaaactggaaagaaaatacaaactaacatcaaataaaagacgtt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29595033 caacccagttctttctcttgcctaaataggtcttatttcgcccaacactcaatcgaaaaactggaaagaaaatacaaactaacatcaaataaaagacgtt 29595132  T
Q  206 tagggaa 212  Q
    |||||||    
T  29595133 tagggaa 29595139  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 7807109 - 7807052
Alignment:
Q  38 cattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatat 95  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  7807109 cattggattaaataagaccatatgatctccttattcgtgaccacactggatctaatat 7807052  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 29595608 - 29595548
Alignment:
Q  13 tcaccggtgtaccactttatttgatcattggattaaataagaccatatgaactcattattt 73  Q
    ||||| |||||||| ||||||||| |||| ||||||||||||| ||| || ||||||||||    
T  29595608 tcaccagtgtaccagtttatttgaccattagattaaataagactataagatctcattattt 29595548  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 7806457 - 7806522
Alignment:
Q  14 caccggtgtaccac--tttatttgatcattggattaaataagaccatatgaactcattatttgtga 77  Q
    ||||||||||||||  | ||||||| |||||||||||||||||| ||| || ||| ||||||||||    
T  7806457 caccggtgtaccacactatatttgaccattggattaaataagactataggatctccttatttgtga 7806522  T

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Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 33322211 - 33322020
Alignment:
Q  19 gtgtaccactttatttgatcattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatatttcatcttcacaacccagttctt 118  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||    
T  33322211 gtgtacaactttatttgaccattggattaaataagaacatatgaactcattatttgtgaccacatgggatctaatatttcatcttcac-acctagttttt 33322113  T
Q  119 tctcttgcctaaataggtcttatttcgcccaacactcaatcgaaaaactggaaagaaaatacaaactaacatcaaataaaagacgtttagggaa 212  Q
    |||||||||| |  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33322112 tctcttgcct-agcaggtcttattttgcccaacactcaatcgaaaaactggaaagaaaatgcaaactaacatcaaataaaagacgtttagggaa 33322020  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 33321538 - 33321591
Alignment:
Q  20 tgtaccactttatttgatcattggattaaataagaccatatgaactcattattt 73  Q
    ||||||| ||||||||| |||||||||||||||||| ||| || ||||||||||    
T  33321538 tgtaccaatttatttgaccattggattaaataagactataagatctcattattt 33321591  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 3315477 - 3315380
Alignment:
Q  13 tcaccggtgtaccactttatttgatcattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatatttcatcttcacaacc 110  Q
    |||||||| || ||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3315477 tcaccggtataacacttaatttaaccatcggattaaataagaccatatgaactcattatttgtgaccacattggatctaatatttcatcttcacaacc 3315380  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 3314989 - 3315058
Alignment:
Q  13 tcaccggtgtaccactttatttgatcattggattaaataagaccatatgaactcattatttgtgaccaca 82  Q
    |||||||||||||||||||||| | ||||||||||||| | ||||||  | |||||||||| | ||||||    
T  3314989 tcaccggtgtaccactttatttaaccattggattaaatgaaaccatactatctcattatttataaccaca 3315058  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 8554469 - 8554526
Alignment:
Q  38 cattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatat 95  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  8554469 cattggattaaataagaccatatgatctccttattcgtgaccacactggatctaatat 8554526  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 11938427 - 11938370
Alignment:
Q  38 cattggattaaataagaccatatgaactcattatttgtgaccacattggatctaatat 95  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  11938427 cattggattaaataagaccatatgatctccttattcgtgaccacactggatctaatat 11938370  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 11937733 - 11937799
Alignment:
Q  13 tcaccggtgtaccac--tttatttgatcattggattaaataagaccatatgaactcattatttgtga 77  Q
    |||||||||||||||  | ||||||| |||||||||||||||||| |||||| ||| ||||||||||    
T  11937733 tcaccggtgtaccacactatatttgaccattggattaaataagactatatgatctccttatttgtga 11937799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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