View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_low_133 (Length: 209)

Name: NF20783_low_133
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_low_133
NF20783_low_133
[»] chr3 (20 HSPs)
chr3 (14-193)||(17003493-17003672)
chr3 (18-193)||(45261415-45261588)
chr3 (18-193)||(35455359-35455531)
chr3 (60-179)||(40344894-40345012)
chr3 (83-149)||(36659280-36659347)
chr3 (94-179)||(43105143-43105229)
chr3 (21-143)||(25294782-25294904)
chr3 (127-193)||(25295082-25295149)
chr3 (77-180)||(28695609-28695715)
chr3 (88-177)||(30041296-30041386)
chr3 (89-131)||(42279227-42279269)
chr3 (77-129)||(47860704-47860756)
chr3 (104-167)||(49983786-49983850)
chr3 (88-193)||(46918453-46918560)
chr3 (94-131)||(27828561-27828598)
chr3 (88-167)||(22923709-22923789)
chr3 (90-129)||(43320129-43320168)
chr3 (83-165)||(55452513-55452593)
chr3 (91-160)||(8825352-8825422)
chr3 (60-120)||(32211783-32211843)
[»] chr8 (15 HSPs)
chr8 (18-193)||(1445405-1445581)
chr8 (67-179)||(2520102-2520215)
chr8 (88-180)||(2207836-2207928)
chr8 (83-162)||(16890253-16890333)
chr8 (60-180)||(8251301-8251422)
chr8 (77-180)||(31658918-31659021)
chr8 (90-167)||(30653623-30653701)
chr8 (88-180)||(2152385-2152479)
chr8 (83-180)||(40314280-40314378)
chr8 (94-194)||(36408181-36408283)
chr8 (100-173)||(30870743-30870817)
chr8 (89-129)||(43594405-43594445)
chr8 (104-177)||(36054884-36054958)
chr8 (94-179)||(38209515-38209601)
chr8 (111-179)||(29917031-29917099)
[»] chr1 (21 HSPs)
chr1 (60-190)||(9851771-9851906)
chr1 (61-192)||(28469986-28470113)
chr1 (61-179)||(31152502-31152618)
chr1 (94-194)||(46443752-46443852)
chr1 (88-193)||(36437189-36437297)
chr1 (94-180)||(42454868-42454955)
chr1 (60-165)||(31181014-31181119)
chr1 (83-167)||(28165110-28165195)
chr1 (88-179)||(32715758-32715850)
chr1 (104-180)||(39150187-39150263)
chr1 (60-165)||(31003547-31003652)
chr1 (60-190)||(42745597-42745729)
chr1 (67-141)||(25130217-25130292)
chr1 (88-131)||(45691591-45691634)
chr1 (94-179)||(17971358-17971444)
chr1 (88-177)||(28723954-28724044)
chr1 (77-129)||(52336850-52336902)
chr1 (91-157)||(948144-948212)
chr1 (77-144)||(17988133-17988201)
chr1 (94-160)||(27442368-27442435)
chr1 (90-179)||(2619678-2619769)
[»] chr7 (13 HSPs)
chr7 (75-191)||(20949126-20949243)
chr7 (83-193)||(41508151-41508263)
chr7 (69-180)||(7307506-7307618)
chr7 (77-191)||(34470111-34470227)
chr7 (67-193)||(12485327-12485455)
chr7 (67-193)||(12506759-12506887)
chr7 (94-155)||(6549065-6549127)
chr7 (95-179)||(10599747-10599832)
chr7 (94-176)||(2122418-2122501)
chr7 (69-115)||(508601-508647)
chr7 (91-129)||(14658767-14658805)
chr7 (89-161)||(17757376-17757449)
chr7 (60-129)||(45072480-45072549)
[»] chr2 (22 HSPs)
chr2 (60-193)||(38214164-38214299)
chr2 (17-170)||(21794911-21795065)
chr2 (67-179)||(39063563-39063676)
chr2 (60-180)||(38496538-38496659)
chr2 (60-193)||(40664285-40664421)
chr2 (60-177)||(16781329-16781447)
chr2 (60-180)||(40503940-40504061)
chr2 (88-179)||(32872407-32872499)
chr2 (90-180)||(3268863-3268954)
chr2 (90-180)||(3269422-3269513)
chr2 (90-180)||(3269981-3270072)
chr2 (94-193)||(14200363-14200464)
chr2 (67-118)||(21229611-21229662)
chr2 (94-167)||(7011169-7011243)
chr2 (95-180)||(40442783-40442869)
chr2 (77-177)||(4015767-4015868)
chr2 (32-140)||(2761616-2761727)
chr2 (91-131)||(13027917-13027957)
chr2 (88-131)||(34309327-34309370)
chr2 (94-179)||(31405011-31405097)
chr2 (91-179)||(19285946-19286035)
chr2 (67-128)||(28650180-28650241)
[»] scaffold0088 (1 HSPs)
scaffold0088 (67-191)||(51326-51452)
[»] chr5 (15 HSPs)
chr5 (83-191)||(11983567-11983676)
chr5 (83-180)||(2225645-2225743)
chr5 (87-193)||(19296148-19296254)
chr5 (90-179)||(11691051-11691141)
chr5 (83-180)||(18705064-18705162)
chr5 (61-180)||(29948030-29948150)
chr5 (67-159)||(6688875-6688968)
chr5 (104-180)||(7735819-7735896)
chr5 (94-178)||(14417923-14418008)
chr5 (94-175)||(4449509-4449589)
chr5 (60-101)||(5289014-5289055)
chr5 (69-109)||(36477867-36477907)
chr5 (77-129)||(43442144-43442196)
chr5 (88-193)||(3629199-3629306)
chr5 (101-193)||(27193062-27193156)
[»] chr4 (11 HSPs)
chr4 (60-179)||(18838817-18838938)
chr4 (67-180)||(31707321-31707432)
chr4 (67-149)||(47231542-47231624)
chr4 (77-149)||(44720561-44720634)
chr4 (67-167)||(30615194-30615295)
chr4 (88-179)||(25376834-25376926)
chr4 (96-165)||(42312399-42312469)
chr4 (90-150)||(33721603-33721664)
chr4 (67-112)||(34320853-34320898)
chr4 (69-159)||(32599730-32599820)
chr4 (125-165)||(40413088-40413128)
[»] chr6 (11 HSPs)
chr6 (77-193)||(34837129-34837247)
chr6 (61-144)||(12143682-12143766)
chr6 (76-179)||(2950132-2950234)
chr6 (60-180)||(180405-180526)
chr6 (77-179)||(1856817-1856919)
chr6 (106-179)||(6657944-6658018)
chr6 (88-193)||(606607-606714)
chr6 (60-180)||(7926870-7926991)
chr6 (91-163)||(31116403-31116476)
chr6 (104-167)||(12453711-12453775)
chr6 (64-117)||(24789900-24789953)
[»] scaffold0024 (1 HSPs)
scaffold0024 (60-180)||(154405-154526)
[»] scaffold1809 (1 HSPs)
scaffold1809 (60-193)||(459-594)
[»] scaffold0836 (1 HSPs)
scaffold0836 (88-170)||(3097-3180)
[»] scaffold0015 (1 HSPs)
scaffold0015 (94-160)||(38829-38896)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 17003493 - 17003672
Alignment:
Q  14 ataatactccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaa 113  Q
    ||||||||||||| |||| ||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17003493 ataatactccctccggtgtttattataagcaacaaaataaaaaaaacatcaatactaatgcattcattgattaatgtaactttttgaatatttttacaaa 17003592  T
Q  114 tataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaatagggataaaaaagt 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17003593 tataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaatagggataaaaaagt 17003672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 45261588 - 45261415
Alignment:
Q  18 tactccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatata 117  Q
    ||||||||| ||| |||||||||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45261588 tactccctccggtccttattataagcaacaaaaccaaaaaa-catcaaaaccaatgcattcattgattaatgtaactttttgaacatttttacaaatata 45261490  T
Q  118 ccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaatagggataaaaaagt 193  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45261489 ccctca-aaaaattgtgaaacattaaatacacccactaatatttaaaagagaaacattaaatagggatagaaaagt 45261415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 35455531 - 35455359
Alignment:
Q  18 tactccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatata 117  Q
    ||||| ||| ||| ||||||||||||||||||||        |||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  35455531 tactcactccggtccttattataagcaacaaaac-taaaaaacatcaaaaccaatgcatttattgattaaagtaactttttgaatatttctacaaatata 35455433  T
Q  118 ccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaatagggataaaaaagt 193  Q
      ||||| |||||||||||||||||||| |||| ||||||||||| ||| | |||||||||||||||||| ||||||    
T  35455432 --ctcataaaaaattgtgaaacattaaatacactcactaatattt-aaatataaacattaaatagggatagaaaagt 35455359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 40344894 - 40345012
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| ||||||||| |||||||||| || ||||||||||||||||||||||||||||||| || |||||||||||| ||||||  | || ||||||||    
T  40344894 catcaaaaccaatgcagtcattgattattgcaactttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaa--atactcactaata 40344991  T
Q  159 tttaaaagagaaacattaaat 179  Q
    || |||||| ||| |||||||    
T  40344992 ttaaaaagacaaatattaaat 40345012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 36659347 - 36659280
Alignment:
Q  83 attaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacac 149  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||||| ||||    
T  36659347 attaatgtaactttttgaatatttttacaagtataccctaataaaaaattatgaaacattaaatacac 36659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 43105143 - 43105229
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    ||||||||| |||||||||||||||||||||||||| |||||||  || ||| | ||||||||||||| ||||||  ||||||||||    
T  43105143 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtatcaaatatacccactaatattgaaaagatcaacattaaat 43105229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 25294782 - 25294904
Alignment:
Q  21 tccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccc 120  Q
    |||||| ||| ||||||||||| |||||||||       ||||||||||||| || ||||| ||||||| |||| ||| |||||||||| ||| |||| |    
T  25294782 tccctccggtccttattataagaaacaaaaccaaaaaa-catcaataccaatacaatcattaattaatgaaactatttaaatatttttataaacatactc 25294880  T
Q  121 tcat-aaaaattgtgaaacattaa 143  Q
    |||| |||||||||||||||||||    
T  25294881 tcataaaaaattgtgaaacattaa 25294904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 25295082 - 25295149
Alignment:
Q  127 aaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-agggataaaaaagt 193  Q
    ||||||||||||||| || | ||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  25295082 aaattgtgaaacatttaataaacccactaatattaaaaagagaagcattaaatgagggataaaaaagt 25295149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 28695715 - 28695609
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatat--accctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaaca 173  Q
    ||||| |||| |||||||||||||||||||||||||||||  || || ||||||| |||||||||||||| ||||   ||||||||| |||| | ||||     
T  28695715 tcattaattagtgtaactttttgaatatttttacaaatatacacgcttataaaaagttgtgaaacattaaccacagttactaatattaaaaacaaaaacg 28695616  T
Q  174 ttaaata 180  Q
    |||||||    
T  28695615 ttaaata 28695609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 30041296 - 30041386
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcataaa-aattgtgaaacattaaacacacccactaatatttaaaagagaaacattaa 177  Q
    ||||| ||||||||| |||||| ||||||||||||||||| | |||||||  |||||| | | ||||||||||| |||||| |||||||||    
T  30041296 tgtaattttttgaatgtttttataaatataccctcataaagatttgtgaagtattaaatataaccactaatattaaaaagacaaacattaa 30041386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 42279227 - 42279269
Alignment:
Q  89 gtaactttttgaatatttttacaaatataccctcataaaaatt 131  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  42279227 gtaacttttttaatatttttacaaatataccctcataaaaatt 42279269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 47860756 - 47860704
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaa 129  Q
    ||||| ||||||||||||||||  |||||||||| ||||||||||||||||||    
T  47860756 tcattaattaatgtaactttttagatatttttactaatataccctcataaaaa 47860704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 49983850 - 49983786
Alignment:
Q  104 tttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaaga 167  Q
    |||||||||||||||||||||||||| |||||||  |||||| | ||||||||||||| ||||||    
T  49983850 tttttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaaga 49983786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 46918453 - 46918560
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-agggat 185  Q
    ||||| ||||| || ||||||||||||||||||| ||| || ||| |||||||||||| |||  || ||||||| |||||| | ||||||||| | ||||    
T  46918453 tgtaaatttttaaacatttttacaaatatacccttatagaatattttgaaacattaaatacattcattaatattaaaaagacagacattaaatgaaggat 46918552  T
Q  186 aaaaaagt 193  Q
    ||||||||    
T  46918553 aaaaaagt 46918560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 27828598 - 27828561
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaatt 131  Q
    |||||||||||||||||||||||||| |||||||||||    
T  27828598 tttttgaatatttttacaaatataccttcataaaaatt 27828561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 22923789 - 22923709
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaaga 167  Q
    |||||||||||  ||||||||||||||||||| ||||||||| ||||||   |||||| | ||| ||||||||| ||||||    
T  22923789 tgtaactttttatatatttttacaaatataccttcataaaaatttgtgatgtattaaatatacctactaatattaaaaaga 22923709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 43320129 - 43320168
Alignment:
Q  90 taactttttgaatatttttacaaatataccctcataaaaa 129  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  43320129 taactttttgaatatttttacaaatacacccttataaaaa 43320168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 55452593 - 55452513
Alignment:
Q  83 attaatgtaactttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaa 165  Q
    |||| ||||||||||| |||  |||| |||||||||  |||||||||||||||  ||||||| ||||| ||||||| ||||||    
T  55452593 attattgtaacttttttaattcttttgcaaatatac--tcataaaaattgtgagtcattaaatacacctactaatacttaaaa 55452513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 8825352 - 8825422
Alignment:
Q  91 aactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatt 160  Q
    |||||||| |||||||||| ||||||||||| || |||||||||| | ||||||| |||| || |||||||    
T  8825352 aactttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaatatt 8825422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 32211783 - 32211843
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccc 120  Q
    |||||| ||||||||| ||||| |||| ||||| |||||  ||||||||||||||| ||||    
T  32211783 catcaaaaccaatgcactcattaattagtgtaattttttttatatttttacaaatacaccc 32211843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 1445581 - 1445405
Alignment:
Q  18 tactccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatata 117  Q
    ||||||||||||  ||||||||||||||||||| |       |||||| | |||||||||||||||||||||||| |||||||||| |||||||||||||    
T  1445581 tactccctcgggaccttattataagcaacaaaaacaaaaaatcatcaaaatcaatgcattcattgattaatgtaattttttgaatacttttacaaatata 1445482  T
Q  118 ccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaatagggataaaaaagt 193  Q
    || |||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  1445481 ccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaacattaaatagggatagaaaagt 1445405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 2520102 - 2520215
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaa 165  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || | || ||||||||||||    
T  2520102 accaatacattcattaattaatgtaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatactctcaataatatttaaaa 2520201  T
Q  166 gagaaacattaaat 179  Q
     || ||||||||||    
T  2520202 aaggaacattaaat 2520215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 2207928 - 2207836
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||| | ||||||||||||    
T  2207928 tgtaactttttgaatatttttacaaatataccctcataaaaattgtgaagcattaaatacacccattaatattaaaaatacaaacattaaata 2207836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 16890253 - 16890333
Alignment:
Q  83 attaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatattta 162  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||||    
T  16890253 attaatgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatattta 16890333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 8251422 - 8251301
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| |||||| || ||||| |||| ||||  |||||||||||||||||||||||||||||||| ||||||||||| ||||||| | || ||||||||    
T  8251422 catcaaaaccaatacactcattaattagtgtagttttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataaactcactaata 8251323  T
Q  159 tttaaaagagaaacattaaata 180  Q
    || |||||| || |||||||||    
T  8251322 ttaaaaagacaaccattaaata 8251301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 31659021 - 31658918
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacatta 176  Q
    ||||| |||| | ||| |||||||||||||||||||||||| ||||||||||||| || | ||||||| ||| |||||| |||| |||||| ||||||||    
T  31659021 tcattaattagtataattttttgaatatttttacaaatatatcctcataaaaattatgcagcattaaatacatccactagtattaaaaagacaaacatta 31658922  T
Q  177 aata 180  Q
    ||||    
T  31658921 aata 31658918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 30653623 - 30653701
Alignment:
Q  90 taactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaaga 167  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||  |||| |||| ||||||    
T  30653623 taactttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacacaaactagtattaaaaaga 30653701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 2152479 - 2152385
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatt-taaaagagaaacattaaata 180  Q
    |||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||| | || | ||||||||  |||||| ||||||||||||    
T  2152479 tgtaactttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaagataaacattaaata 2152385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 40314378 - 40314280
Alignment:
Q  83 attaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    ||||||||||| |||| |||||||||||||||||| | |||| ||||||| |||||||||||| ||| | || ||||||| ||| |||| |||||||||    
T  40314378 attaatgtaaccttttaaatatttttacaaatatatcttcataaaaaattatgaaacattaaatacatctacaaatattttaaaaagaagcattaaata 40314280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 36408181 - 36408283
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaatt-gtgaaacattaaacacacccactaatatttaaaagagaaacattaaa-tagggataaaaaa 191  Q
    ||||||||| |||||||||||||||||||||||||||| || ||  |||||  | | ||||||||||| |||||| ||||||||||  |||| |||||||    
T  36408181 tttttgaatgtttttacaaatataccctcataaaaatttgttaagtattaattatatccactaatattaaaaagacaaacattaaacgagggttaaaaaa 36408280  T
Q  192 gtt 194  Q
    |||    
T  36408281 gtt 36408283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 30870743 - 30870817
Alignment:
Q  100 aatatttttacaaatataccctcataaaa-attgtgaaacattaaacacacccactaatatttaaaagagaaaca 173  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||| | | ||||||||||| ||| || |||||    
T  30870743 aatattttgacaaatatacccttataaaaaattgtgaaacattaaatatatccactaatattaaaatgacaaaca 30870817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 43594405 - 43594445
Alignment:
Q  89 gtaactttttgaatatttttacaaatataccctcataaaaa 129  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  43594405 gtaactttttaaatatttttactaatataccctcataaaaa 43594445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 36054958 - 36054884
Alignment:
Q  104 tttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaa 177  Q
    |||||| ||||||||||| || |||||||| |||  |||||| ||| ||||||||||| |||||| |||||||||    
T  36054958 tttttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaa 36054884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 38209515 - 38209601
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    ||||| |||||||||| |||||||||||  |||||| |||||||  ||| || | ||||||||||||| ||||||  ||||||||||    
T  38209515 tttttaaatatttttataaatatacccttttaaaaatttgtgaagtatttaatatacccactaatattgaaaagaccaacattaaat 38209601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 29917099 - 29917031
Alignment:
Q  111 aaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    ||||||||||| | ||||| |||||| ||||||| |||| |||||||||| |||| ||||  |||||||    
T  29917099 aaatatacccttaaaaaaactgtgaagcattaaatacactcactaatattaaaaaaagaagtattaaat 29917031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 190
Target Start/End: Original strand, 9851771 - 9851906
Alignment:
Q  60 catcaataccaatgcattcattgat----taatgtaactttttgaatatttttacaaatataccctcataaaa-attgtgaaacattaaacacacccact 154  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| | |||||| | |||||||||||||| | |||||||    
T  9851771 catcaataccaatgcattcattgatatattaatgtaactttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccact 9851870  T
Q  155 aatatttaaaagagaaacattaaatagggataaaaa 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  9851871 aatatttaaaagagaaacattaaatagggataaaaa 9851906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 28470113 - 28469986
Alignment:
Q  61 atcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatat 159  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||     | |||| |||||||||| ||||||||||||||| |||||||| |||||    
T  28470113 atcaaaaccaatgcattcattgattaatgcaactttttgaatatttt-----acatactctcataaaaaattgtgaaacattaaatacacccacaaatat 28470019  T
Q  160 ttaaaagagaaacattaaatagggataaaaaag 192  Q
    ||||||||||||||||||||| ||||| |||||    
T  28470018 ttaaaagagaaacattaaataaggatagaaaag 28469986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 31152618 - 31152502
Alignment:
Q  61 atcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatt 160  Q
    ||||| ||||||||| | | | ||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||   |||||||| |    
T  31152618 atcaaaaccaatgcaattaataattcatgtaactttttgaatatttttacaaatatacgctcataaaaa-tgtgaaacattaaatacgttcactaata-t 31152521  T
Q  161 taaaagagaaacattaaat 179  Q
    |||||||||||||||||||    
T  31152520 taaaagagaaacattaaat 31152502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 46443852 - 46443752
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaatagggataaaaaagt 193  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||  |||||| ||| |||||||||  || ||  ||||||||||||||    
T  46443852 tttttgaatatttttacaaatatacccacataaaaattgtgaaacattatatacattcactaacattaaaaagagaactataaatgagggataaaaaagt 46443753  T
Q  194 t 194  Q
    |    
T  46443752 t 46443752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 36437189 - 36437297
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacaca-cccactaatatttaaaagagaaacattaaat-aggga 184  Q
    ||||||||||| || ||||||||||||||||||| ||| ||  ||||||||||||||| ||| |||||||||||| |||||| | ||||||||| |||||    
T  36437189 tgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatcccactaatattaaaaagacagacattaaatgaggga 36437288  T
Q  185 taaaaaagt 193  Q
    |||||||||    
T  36437289 taaaaaagt 36437297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 42454868 - 42454955
Alignment:
Q  94 tttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    |||||||||||||||| |||||||||||||| ||||||| |||| ||||||| |||| |||||||||| |||||| |||| |||||||    
T  42454868 tttttgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaagacaaacgttaaata 42454955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 31181014 - 31181119
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| ||||||||| ||||| || | | ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||| | ||||||    
T  31181014 catcaaaaccaatgcaatcattaatca-tataactttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatacactcgctaata 31181112  T
Q  159 tttaaaa 165  Q
    || ||||    
T  31181113 ttaaaaa 31181119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 28165110 - 28165195
Alignment:
Q  83 attaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaaga 167  Q
    |||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| ||| | || |||||| ||||||    
T  28165110 attattgtaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatctaccaatattaaaaaga 28165195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 32715850 - 32715758
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    ||||| ||||||||| |||||||||||||| ||||||||||| |||||||  |||||| | ||||||||||||| ||||||  ||||||||||    
T  32715850 tgtaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatatacccactaatattgaaaagatcaacattaaat 32715758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 39150187 - 39150263
Alignment:
Q  104 tttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    ||||||||||||||||||||||||| ||||||| ||||||| |||| || ||||||| |||| | ||||||||||||    
T  39150187 tttttacaaatataccctcataaaagttgtgaagcattaaatacactcattaatattaaaaacaaaaacattaaata 39150263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 31003547 - 31003652
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| ||||||||| ||||| || | |||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||| |||  | ||||||    
T  31003547 catcaaaaccaatgcaatcattaatca-tgtaactttttgaatatttttacaaatatacctttatagaaaattgttaaacattaaatacattcgctaata 31003645  T
Q  159 tttaaaa 165  Q
    || ||||    
T  31003646 ttaaaaa 31003652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 42745729 - 42745597
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| ||||||||  ||||| |||   |||||||||| || ||||||||||||||||||| ||| ||  ||||||||||||||| ||| |||||||||    
T  42745729 catcaaaaccaatgctatcattaattgtcgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaata 42745630  T
Q  159 tttaaaagagaaacattaaat-agggataaaaa 190  Q
    || |||||  || | |||||| |||||||||||    
T  42745629 ttaaaaaggcaatccttaaatgagggataaaaa 42745597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 25130292 - 25130217
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacatt 141  Q
    ||||||||| | ||| |||| ||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  25130292 accaatgcagttattaattattgtaaatttttgaatacttttacaaatataccatcatagaaaattgtgaaacatt 25130217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 45691591 - 45691634
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcataaaaatt 131  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  45691591 tgtaattttttgaatatttttacaaatataccctcataaaaatt 45691634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 17971358 - 17971444
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||  |||||| | || |||||||||| ||||||  ||||||||||    
T  17971358 tttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaat 17971444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 28723954 - 28724044
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaa 177  Q
    ||||| |||||||||  ||||||| ||||||||||||||||| |||||||  |||||| | | ||||||||||| |||||| |||||||||    
T  28723954 tgtaattttttgaatgcttttacagatataccctcataaaaatttgtgaagtattaaatataaccactaatattaaaaagataaacattaa 28724044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 52336850 - 52336902
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaa 129  Q
    ||||| ||||||||||||||||  |||||||||| ||||||||||||||||||    
T  52336850 tcattaattaatgtaactttttagatatttttactaatataccctcataaaaa 52336902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 948144 - 948212
Alignment:
Q  91 aactttttgaatatttttacaaatataccctcataaaaa--ttgtgaaacattaaacacacccactaat 157  Q
    |||||||| ||||||||| |||||||||||| |||||||  ||| ||||||||||| ||| ||||||||    
T  948144 aactttttaaatattttttcaaatataccctgataaaaaatttgcgaaacattaaatacatccactaat 948212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 17988133 - 17988201
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcataa-aaattgtgaaacattaaa 144  Q
    ||||| || ||| ||||||||  |||| ||||||||||||| |||||||| ||||||||||||||||||    
T  17988133 tcattaataaatataacttttaaaataattttacaaatatatcctcataataaattgtgaaacattaaa 17988201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 27442368 - 27442435
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatt 160  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||  |||||| | ||||| |||||||    
T  27442368 tttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaatatacccattaatatt 27442435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 2619678 - 2619769
Alignment:
Q  90 taactttttgaatatttttacaaatataccctcat--aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    ||||||||||||||||| | ||| |||||||||||  ||||||||| || |||||||  ||  | ||||| ||||||| | |||||||||||    
T  2619678 taactttttgaatatttgtgcaattataccctcataaaaaaattgtcaagcattaaatgcattctctaatgtttaaaaaacaaacattaaat 2619769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 20949243 - 20949126
Alignment:
Q  75 attcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaagagaaaca 173  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||| |||||||| |||    
T  20949243 attcattgattaatgtaactttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagaca 20949144  T
Q  174 ttaaatagggataaaaaa 191  Q
    ||||||||||||||||||    
T  20949143 ttaaatagggataaaaaa 20949126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 41508263 - 41508151
Alignment:
Q  83 attaatgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-a 180  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| ||||||||||| |    
T  41508263 attagtgtaactttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaatattaaaaagacaaacattaaataa 41508164  T
Q  181 gggataaaaaagt 193  Q
    ||| |||||||||    
T  41508163 ggggtaaaaaagt 41508151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 7307618 - 7307506
Alignment:
Q  69 caatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaaga 167  Q
    ||||||| ||||| ||||  ||||| ||||| |||||||||||||||||| ||||| |||||||||||| ||||||| ||| ||||||||||| |||| |    
T  7307618 caatgcaatcattaattagggtaaccttttgcatatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaa 7307519  T
Q  168 gaaacattaaata 180  Q
     |||| |||||||    
T  7307518 caaaccttaaata 7307506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 34470227 - 34470111
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaagagaaacatt 175  Q
    ||||| ||||||  |||||||||||||||||||||||||||  | | || |||||||||||| |||||| |||| |||||||||| ||||||||| ||||    
T  34470227 tcattaattaattaaactttttgaatatttttacaaatataaacacttacaaaattgtgaaatattaaatacactcactaatattaaaaagagaagcatt 34470128  T
Q  176 aaa-tagggataaaaaa 191  Q
    |||  ||||||||||||    
T  34470127 aaacgagggataaaaaa 34470111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 12485455 - 12485327
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaa 165  Q
    ||||||||| ||||| |||| |||||||||||| ||| | ||||||||||||||||||| |||||||||||||| |||| ||||  ||| | ||| ||||    
T  12485455 accaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaa 12485356  T
Q  166 gagaaacattaaat-agggataaaaaagt 193  Q
     | | ||||||||| ||||||| ||||||    
T  12485355 caaacacattaaataagggatagaaaagt 12485327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 12506887 - 12506759
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaa 165  Q
    ||||||||| ||||| |||| |||||||||||| ||| | ||||||||||||||||||| |||||||||||||| |||| ||||  ||| | ||| ||||    
T  12506887 accaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaa 12506788  T
Q  166 gagaaacattaaat-agggataaaaaagt 193  Q
     | | ||||||||| ||||||| ||||||    
T  12506787 caaacacattaaataagggatagaaaagt 12506759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 6549065 - 6549127
Alignment:
Q  94 tttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccacta 155  Q
    ||||||||||||||||| |||||||| | || |||||||||||||||||||| ||| ||||||    
T  6549065 tttttgaatatttttactaatataccttaataaaaaattgtgaaacattaaatacatccacta 6549127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 10599747 - 10599832
Alignment:
Q  95 ttttgaatatttttacaaatataccctcataaaa-attgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    ||||||||  ||||||||||||||||||||||||  |||||||  |||||| | || ||||| |||| |||||| |||||||||||    
T  10599747 ttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaat 10599832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 2122501 - 2122418
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaa-aattgtgaaacattaaacacacccactaatatttaaaagagaaacatta 176  Q
    |||||||||||||||||||||| | | || |||| || ||| || ||||||| |||| |||||||||| |||||| ||||||||    
T  2122501 tttttgaatatttttacaaatacagcatcgtaaacaaatgttaagcattaaatacactcactaatattaaaaagacaaacatta 2122418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 508647 - 508601
Alignment:
Q  69 caatgcattcattgattaatgtaactttttgaatatttttacaaata 115  Q
    ||||||| | ||| |||| ||||||||||||||||||||||||||||    
T  508647 caatgcaatgattaattattgtaactttttgaatatttttacaaata 508601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 14658767 - 14658805
Alignment:
Q  91 aactttttgaatatttttacaaatataccctcataaaaa 129  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  14658767 aactttttaaatgtttttacaaatataccctcataaaaa 14658805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 17757376 - 17757449
Alignment:
Q  89 gtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatattt 161  Q
    |||||||||| ||| |||||||||||||| | |||| ||||||||||||  ||| || | ||||||||||||||    
T  17757376 gtaacttttttaatgtttttacaaatatatcttcataaaaaattgtgaattattgaatatacccactaatattt 17757449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 45072480 - 45072549
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaa 129  Q
    |||||| |||||| || | ||| |||| | ||| |||||||||||||||| |||||||| ||||||||||    
T  45072480 catcaaaaccaatacactgattaattagtataattttttgaatatttttataaatatactctcataaaaa 45072549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 38214299 - 38214164
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| |||||| || ||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||  |||||||    
T  38214299 catcaaaaccaatacaatcattgattaaagaaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatacacatactaata 38214200  T
Q  159 tttaaaagagaaacattaaat-agggataaaaaagt 193  Q
    || |||||||||  ||||||| ||||||| ||||||    
T  38214199 ttaaaaagagaagtattaaatgagggatataaaagt 38214164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 21795065 - 21794911
Alignment:
Q  17 atactccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatat 116  Q
    |||||||||| ||| ||||||||||| ||||||| |       |||||| ||||||  | ||||||||||| | ||||||||||||||||||||||||||    
T  21795065 atactccctccggtccttattataagaaacaaaatcaaaaaa-catcaaaaccaatataatcattgattaaagaaactttttgaatatttttacaaatat 21794967  T
Q  117 accctcata--aaaattgtgaaacattaaacacacccactaatatttaaaagagaa 170  Q
    |||||||||  ||||||||||||||||||| |||| |||||||||| |||||||||    
T  21794966 accctcataaaaaaattgtgaaacattaaatacacacactaatattaaaaagagaa 21794911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 39063563 - 39063676
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaa 165  Q
    |||||| || ||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||| ||||    
T  39063563 accaatacaatcattgattaaagaaactttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacactaatattaaaaa 39063662  T
Q  166 gagaaacattaaat 179  Q
    |||||  |||||||    
T  39063663 gagaagtattaaat 39063676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 38496659 - 38496538
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaat-tgtgaaacattaaacacacccactaata 158  Q
    |||||| ||||||||  ||||| |||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||||||    
T  38496659 catcaaaaccaatgctatcattaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatacacctactaata 38496560  T
Q  159 tttaaaagagaaacattaaata 180  Q
    || |||| | |||| |||||||    
T  38496559 ttaaaaatacaaacgttaaata 38496538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 40664421 - 40664285
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| |||||| || ||||| ||||| | ||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||| ||| |||     
T  40664421 catcaaaaccaatacaatcattaattaaagaaactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatacacacaccaatg 40664322  T
Q  159 tt-taaaagagaaacattaaat-agggataaaaaagt 193  Q
    ||  ||||||||| |||||||| ||||||| ||||||    
T  40664321 ttaaaaaagagaagcattaaatgagggatataaaagt 40664285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 16781447 - 16781329
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| ||||||| | ||||| |||| | ||| |||||||||| || ||||||||||||||||| |||||| ||||||||||||| ||||| |||||||    
T  16781447 catcaaaaccaatgtaatcattaattagtctaattttttgaataattatacaaatataccctcattaaaaatggtgaaacattaaatacacctactaata 16781348  T
Q  159 tttaaaagagaaacattaa 177  Q
    ||  ||||| |||||||||    
T  16781347 ttacaaagacaaacattaa 16781329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 40504061 - 40503940
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaata 158  Q
    |||||| | ||||| | ||||| |||| |||||  ||||||||||||||||| ||||||||||||||||| ||||||| |||||||  |||| |||||||    
T  40504061 catcaaaatcaatgtaatcattaattagtgtaatcttttgaatatttttacagatataccctcataaaaagttgtgaagcattaaatgcacctactaata 40503962  T
Q  159 tttaaaagagaaacattaaata 180  Q
    || |||||| ||||| ||||||    
T  40503961 ttaaaaagacaaacaataaata 40503940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 32872499 - 32872407
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    ||||| ||||||||| |||||||||||||||||||||| |||||||||||  |||||| | ||||||||||||| ||| || |||||||||||    
T  32872499 tgtaattttttgaatgtttttacaaatataccctcataaaaaattgtgaagtattaaatatacccactaatattaaaaggacaaacattaaat 32872407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 3268954 - 3268863
Alignment:
Q  90 taactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||| ||||| | ||||||| |||| | ||||||||||||    
T  3268954 taactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaata 3268863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 3269513 - 3269422
Alignment:
Q  90 taactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||| ||||| | ||||||| |||| | ||||||||||||    
T  3269513 taactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaata 3269422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 3270072 - 3269981
Alignment:
Q  90 taactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||| ||||| | ||||||| |||| | ||||||||||||    
T  3270072 taactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaata 3269981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 14200363 - 14200464
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-agggataaaaaa 191  Q
    ||||||||| |||||||||||||||||||||||||| |||||||  |||||| | || |||||||||| ||||||  |||||||||| |||| |||||||    
T  14200363 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattgaaaagatcaacattaaatgagggttaaaaaa 14200462  T
Q  192 gt 193  Q
    ||    
T  14200463 gt 14200464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 21229662 - 21229611
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatatac 118  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  21229662 accaatgcaatcattaattattgtaactttttgaatatttttacaaatatac 21229611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 7011243 - 7011169
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaaga 167  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||  |||||| | ||||||||||||| ||||||    
T  7011243 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatacccactaatattgaaaaga 7011169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 40442869 - 40442783
Alignment:
Q  95 ttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    ||||||||||||||| | ||||||||| ||||||| ||||||| |||||||  |||| ||||||||| |||||| ||||| ||||||    
T  40442869 ttttgaatatttttatagatatacccttataaaaagttgtgaagcattaaatgcacctactaatattaaaaagataaacaataaata 40442783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 4015767 - 4015868
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacatt 175  Q
    ||||| |||| | |||||||||||||| || || |||||||||||| | ||||||| ||||||||||||  |||| |||||||||  ||||| |||||||    
T  4015767 tcattaattagtctaactttttgaataattatataaatataccctcgttaaaaattatgaaacattaaatgcacctactaatattacaaagacaaacatt 4015866  T
Q  176 aa 177  Q
    ||    
T  4015867 aa 4015868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 2761727 - 2761616
Alignment:
Q  32 cttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatatttttacaa--atataccctcat-aaaa 128  Q
    ||||||||||| |||||||||       ||| || ||| ||||| ||||| |||| |||||||||||||||||||||| ||  ||||| |||||| ||||    
T  2761727 cttattataagaaacaaaaccaaaaaaacattaaaaccgatgcaatcattaattagtgtaactttttgaatatttttataaatatatatcctcataaaaa 2761628  T
Q  129 attgtgaaacat 140  Q
    ||||||||||||    
T  2761627 attgtgaaacat 2761616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 13027957 - 13027917
Alignment:
Q  91 aactttttgaatatttttacaaatataccctcataaaaatt 131  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  13027957 aactttttgaatatttttacaaatatatcctcatagaaatt 13027917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 34309370 - 34309327
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcataaaaatt 131  Q
    ||||| |||||||||  |||||||||||||||||||||||||||    
T  34309370 tgtaattttttgaatgcttttacaaatataccctcataaaaatt 34309327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 31405097 - 31405011
Alignment:
Q  94 tttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    |||||||||||||||||||||||| ||||||| ||| || ||||  |||||| | |  |||||||||| |||||| ||| |||||||    
T  31405097 tttttgaatatttttacaaatatatcctcatagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaat 31405011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 19286035 - 19285946
Alignment:
Q  91 aactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    |||||||| |||| ||||||||||||| ||  ||| ||| ||||||| ||||||| |||  |||||||||| |||||| ||| |||||||    
T  19286035 aactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattgaaaagacaaatattaaat 19285946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 28650180 - 28650241
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaa 128  Q
    ||||||||| | ||| || ||| ||||||||| ||||||||||  |||||||||||||||||    
T  28650180 accaatgcaataattaatgaatttaacttttttaatatttttatgaatataccctcataaaa 28650241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 51452 - 51326
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaa 165  Q
    |||||| || ||||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| ||| ||||    
T  51452 accaatacaatcattaattaatgtaacattttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaaa 51353  T
Q  166 gagaaacattaaat-agggataaaaaa 191  Q
    |||||  ||||||| ||||||||||||    
T  51352 gagaattattaaatgagggataaaaaa 51326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 11983567 - 11983676
Alignment:
Q  83 attaatgtaactttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-ag 181  Q
    ||||| ||||||||||||||| |||||||||||||| ||  ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| ||    
T  11983567 attaaggtaactttttgaatacttttacaaatatactcttgtaaaaattgtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgag 11983666  T
Q  182 ggataaaaaa 191  Q
    || |||||||    
T  11983667 gggtaaaaaa 11983676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 2225743 - 2225645
Alignment:
Q  83 attaatgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    |||| ||||||||||  |||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||| |||| | ||||||||||||    
T  2225743 attagtgtaacttttgaaatatttttacaaatataccttcataaaaagttgtgaaacattaaatacaaccactaatattaaaaacaaaaacattaaata 2225645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 19296148 - 19296254
Alignment:
Q  87 atgtaactttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaatagggata 186  Q
    ||||||||||||   | |||||||| ||||||||||||||||||||| ||| |||||||||| || |||||||| ||| ||||||||||||||| |||||    
T  19296148 atgtaactttttatttttttttacatatataccctcataaaaattgtaaaatattaaacacatccgctaatattaaaatgagaaacattaaatatggata 19296247  T
Q  187 aaaaagt 193  Q
     ||||||    
T  19296248 gaaaagt 19296254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 11691051 - 11691141
Alignment:
Q  90 taactttttgaatatttttacaaatataccctcataaaa-attgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    |||||||||||||||||||||||||| | |||||||||| ||| ||||| |||||| |||| |||||| ||| ||||||||||||||||||    
T  11691051 taactttttgaatatttttacaaatacatcctcataaaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaat 11691141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 18705162 - 18705064
Alignment:
Q  83 attaatgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||| ||||| | ||||||| |||| | ||||||||||||    
T  18705162 attagtgtaactttttgaatatttttacaaatatatccttataaaaagttgtgaagcattaaatacacctattaatattaaaaacaaaaacattaaata 18705064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 29948030 - 29948150
Alignment:
Q  61 atcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatat 159  Q
    ||||| ||||||||| |||||  |||||||||||||||  |||||||||||||||||| || || ||||||| | |||||||||| |||| || ||||||    
T  29948030 atcaaaaccaatgcaatcattatttaatgtaacttttttgatatttttacaaatatactctaataaaaaattataaaacattaaatacactcattaatat 29948129  T
Q  160 ttaaaagagaaacattaaata 180  Q
    | |||| | ||||||||||||    
T  29948130 taaaaatataaacattaaata 29948150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 6688968 - 6688875
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatat 159  Q
    ||||||||| ||||| |||| |||||||||||| ||| | ||||||||||||||||||| |||||||| || ||||||| ||||  ||||||||    
T  6688968 accaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtaaagcattaaatacacttactaatat 6688875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 7735896 - 7735819
Alignment:
Q  104 tttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaata 180  Q
    |||||||||||||||||| ||||||| |||| |||||||||| |||||| |||||||| |||| | ||||||||||||    
T  7735896 tttttacaaatatacccttataaaaaattgtcaaacattaaatacacccgctaatattaaaaacaaaaacattaaata 7735819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 14418008 - 14417923
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaa 178  Q
    ||||| |||||| |||||||| |||| ||||||||| ||||||| ||||||| |||||||||||||||||||| | ||| ||||||    
T  14418008 ttttttaatattcttacaaatttaccttcataaaaaattgtgaagcattaaatacacccactaatatttaaaatacaaatattaaa 14417923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 4449589 - 4449509
Alignment:
Q  94 tttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacatt 175  Q
    ||||||||||||||||||||||||||||||| | ||||||||  |||||||| ||| ||| ||| ||| |||||| |||||||    
T  4449589 tttttgaatatttttacaaatataccctcatgagaaattgtg--acattaaatacaaccattaagattaaaaagacaaacatt 4449509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 5289055 - 5289014
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaa 101  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  5289055 catcaaaaccaatgcattaattgattaatgtaactttttgaa 5289014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 36477867 - 36477907
Alignment:
Q  69 caatgcattcattgattaatgtaactttttgaatattttta 109  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  36477867 caatgcaatcattaattaatgtaactttttgaatattttta 36477907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 43442196 - 43442144
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaa 129  Q
    |||||| |||||||||||||||  |||||||||| |||||||| |||||||||    
T  43442196 tcattgtttaatgtaactttttagatatttttaccaatataccatcataaaaa 43442144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 3629199 - 3629306
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaa-tagggat 185  Q
    ||||||||||| || ||||||||||||||| ||| ||| ||  ||||||||||||||| |||  |||||||||| |||| | |  ||||||| |||||||    
T  3629199 tgtaactttttaaacatttttacaaatataaccttatagaatgttgtgaaacattaaatacattcactaatattaaaaatacagtcattaaattagggat 3629298  T
Q  186 aaaaaagt 193  Q
    | ||||||    
T  3629299 acaaaagt 3629306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 27193156 - 27193062
Alignment:
Q  101 atatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-agggataaaaaagt 193  Q
    ||||||||||||||||| | |||| ||||||| |||||||||||| | || || | ||||| ||||||||  |||||||| | ||||||||||||    
T  27193156 atatttttacaaatatatcatcataaaaaattatgaaacattaaaaatactcagttatattaaaaagagatgcattaaatgaaggataaaaaagt 27193062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 18838938 - 18838817
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaat-atttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaat 157  Q
    |||||| ||||||| | ||||| |||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  18838938 catcaaaaccaatgtaatcattaattaatataaatttttgaattatttttacaaatataccctcataaaaaattgtgaaacattaaatacacccactaat 18838839  T
Q  158 atttaaaagagaaacattaaat 179  Q
    ||| |||||| || ||||||||    
T  18838838 attaaaaagataatcattaaat 18838817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 31707321 - 31707432
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaa 165  Q
    |||||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||| |||   | ||||||||||||||| ||||    
T  31707321 accaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaatttatgaagcat---atacacccactaatattaaaaa 31707417  T
Q  166 gagaaacattaaata 180  Q
    || ||||||||||||    
T  31707418 gacaaacattaaata 31707432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 47231542 - 47231624
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacac 149  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||| ||||    
T  47231542 accaatggaatcattaattaatgtaactttttgaatatttttacaattata-cctcataaaaagttgtgaatcattaaatacac 47231624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 44720561 - 44720634
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacac 149  Q
    ||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||  |||||||||| ||||    
T  44720561 tcattgattaatgtaacattttgaatatttttataaatatatcctcataaaaaattgcaaaacattaaatacac 44720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 30615295 - 30615194
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaa 165  Q
    ||||||||| | ||| |||  ||||||||||| |||||||||||||||| ||| | || ||||||| |||||||||||| ||| | ||||||||| ||||    
T  30615295 accaatgcaattattcattgttgtaactttttaaatatttttacaaatacacctttataaaaaattatgaaacattaaatacatctactaatattaaaaa 30615196  T
Q  166 ga 167  Q
    ||    
T  30615195 ga 30615194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 25376834 - 25376926
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    ||||| ||||||||| ||||||||||||||||||| |||||| |||||||  |||||| | || ||| |||||| ||||||  ||||||||||    
T  25376834 tgtaattttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatactcacaaatattgaaaagatcaacattaaat 25376926  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 42312399 - 42312469
Alignment:
Q  96 tttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaa 165  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||| ||| | | || |||||||| ||||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaatatatcctctaatattaaaaa 42312469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 33721603 - 33721664
Alignment:
Q  90 taactttttgaatatttttacaaatataccctcataaaa-attgtgaaacattaaacacacc 150  Q
    ||||||||| |||| ||||||||| |||| ||||||||| |||||||||||||||| |||||    
T  33721603 taactttttcaataattttacaaacatactctcataaaaaattgtgaaacattaaatacacc 33721664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 34320898 - 34320853
Alignment:
Q  67 accaatgcattcattgattaatgtaactttttgaatatttttacaa 112  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||||    
T  34320898 accaatgcattcattaattaatgtaaccttttgaatatctttacaa 34320853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 32599730 - 32599820
Alignment:
Q  69 caatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaa-attgtgaaacattaaacacacccactaatat 159  Q
    |||| |||||||| |||| |  |||||||| |||| ||||| ||||||||| |||||||| |||||||| ||||||| ||| ||||||||||    
T  32599730 caatacattcattaattagtaaaacttttt-aataattttataaatataccttcataaaaaattgtgaagcattaaatacatccactaatat 32599820  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 40413088 - 40413128
Alignment:
Q  125 aaaaattgtgaaacattaaacacacccactaatatttaaaa 165  Q
    |||||||||||||||||||| | | ||||||||||||||||    
T  40413088 aaaaattgtgaaacattaaatatatccactaatatttaaaa 40413128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 34837129 - 34837247
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacatt 175  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||| ||| ||||||| |||||| || ||||    
T  34837129 tcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatattaaaaagacaagcatt 34837228  T
Q  176 aaat-agggataaaaaagt 193  Q
    |||| |||| |||||||||    
T  34837229 aaataaggggtaaaaaagt 34837247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 12143682 - 12143766
Alignment:
Q  61 atcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaa 144  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  12143682 atcaaaaccaatgcaatcattaattaatgtaactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaa 12143766  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 2950132 - 2950234
Alignment:
Q  76 ttcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacatt 175  Q
    |||||| |||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| || | ||||||||||||  |||| | |||||||    
T  2950132 ttcattaattaatgtaattttttgaatatttttacaaatatatcctgataaaaattgtgaaacatt-aatatacccactaatatgaaaaatataaacatt 2950230  T
Q  176 aaat 179  Q
    ||||    
T  2950231 aaat 2950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 180526 - 180405
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| |||||| || ||||| |||| ||||||||||||||||| |||||||||||||||| || ||||||| |||| | ||||| ||| | |||||||    
T  180526 catcaaaaccaatacactcattaattagtgtaactttttgaatatgtttacaaatatacccttataaaaaattttgaagcgttaaatacatcgactaata 180427  T
Q  159 tttaaaagagaaacattaaata 180  Q
    || |||||| ||||||||||||    
T  180426 ttaaaaagacaaacattaaata 180405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 1856919 - 1856817
Alignment:
Q  77 tcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacatta 176  Q
    ||||| |||||||||| ||||| ||||||||||||||||||| |||||| ||| ||| |||||||||| ||  ||| ||||||| |||||||||| ||||    
T  1856919 tcattaattaatgtaattttttaaatatttttacaaatatactctcatacaaaatgtaaaacattaaatacttccattaatattaaaaagagaaatatta 1856820  T
Q  177 aat 179  Q
    |||    
T  1856819 aat 1856817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 6658018 - 6657944
Alignment:
Q  106 tttacaaatataccctcataaaaatt-gtgaaacattaaacacacccactaatatttaaaagagaaacattaaat 179  Q
    |||||||||||||||||||||||||| |||||  |||||| | ||||||||||||| |||||| |||||||||||    
T  6658018 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaat 6657944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 606607 - 606714
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-agggat 185  Q
    ||||||||||| || ||||||||||||||||||| ||| ||  ||||||||||||||| ||| ||||||||||| |||| | |  |||||||| ||||||    
T  606607 tgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaatacagtcattaaataagggat 606706  T
Q  186 aaaaaagt 193  Q
     |||||||    
T  606707 taaaaagt 606714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 7926991 - 7926870
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| |||||| ||  |||| |||| | ||||||||||||||   ||||||||||||||||||| ||||||||||| ||||||| |||| |  |||||    
T  7926991 catcaaaaccaatacacacattaattagtataactttttgaataagattacaaatataccctcataaaaaattgtgaagcattaaatacactctttaata 7926892  T
Q  159 tttaaaagagaaacattaaata 180  Q
    || |||||| ||  ||||||||    
T  7926891 ttaaaaagacaactattaaata 7926870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 31116476 - 31116403
Alignment:
Q  91 aactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaatatttaa 163  Q
    |||||||||||||| |||||||||||||||| ||| | |||||||||||||| || ||| ||| ||| ||||||    
T  31116476 aactttttgaatatgtttacaaatatacccttatagagaattgtgaaacattcaatacatccattaaaatttaa 31116403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 12453711 - 12453775
Alignment:
Q  104 tttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaaga 167  Q
    ||||||||||||||| || ||||||| || ||||||||||||||||  || ||||||||||||||    
T  12453711 tttttacaaatatactctaataaaaagttatgaaacattaaacacattcattaatatttaaaaga 12453775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 24789900 - 24789953
Alignment:
Q  64 aataccaatgcattcattgattaatgtaactttttgaatatttttacaaatata 117  Q
    |||||||||||| ||||| |||  ||||| ||||| ||||||||||||||||||    
T  24789900 aataccaatgcaatcattaattgttgtaattttttaaatatttttacaaatata 24789953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 154526 - 154405
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaata 158  Q
    |||||| |||||| || ||||| |||| |||||||| ||||||||||||||||| || |||||||| |||| |||||| ||||||| |||||||| ||||    
T  154526 catcaaaaccaatacactcattaattagtgtaacttgttgaatatttttacaaacatgccctcataaaaaactgtgaagcattaaatacacccaccaata 154427  T
Q  159 tttaaaagagaaacattaaata 180  Q
    || |||||| ||||||||||||    
T  154426 ttaaaaagacaaacattaaata 154405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 459 - 594
Alignment:
Q  60 catcaataccaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcata-aaaattgtgaaacattaaacacacccactaata 158  Q
    ||||||||||||| |  ||||| |||  ||||||||||| || ||||||||||||||||||| ||| ||  |||||||||||||||   | |||||||||    
T  459 catcaataccaataccatcattaattgttgtaactttttaaagatttttacaaatatacccttatagaatgttgtgaaacattaaatggatccactaata 558  T
Q  159 tttaaaagagaaacattaaat-agggataaaaaagt 193  Q
    || ||| || || |||||||| ||||||||||||||    
T  559 ttaaaacgacaatcattaaatgagggataaaaaagt 594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 3180 - 3097
Alignment:
Q  88 tgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaa 170  Q
    |||| |||||| || ||||||||||| || |||| ||| ||  ||||||||||||||| ||| ||||||||||| |||||||||    
T  3180 tgtacctttttaaacatttttacaaacatgcccttatagaatgttgtgaaacattaaatacatccactaatattaaaaagagaa 3097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 38829 - 38896
Alignment:
Q  94 tttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatt 160  Q
    ||||||||| ||||||||||||||| |||||||||| ||| |||  |||||||| | |||||||||||    
T  38829 tttttgaatgtttttacaaatatactctcataaaaatttgggaactattaaacatatccactaatatt 38896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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