View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_134 (Length: 202)
Name: NF20783_low_134
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_134 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 26397779 - 26397611
Alignment:
| Q |
19 |
ccaacatccattgccaagacattaccttgatcttttccactatctcatccactccaccattccaattattgaaaattttattgttcctagcctcccgcaa |
118 |
Q |
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| T |
26397779 |
ccaacatccatcgccaagacattaccttgatctcttccactatctcatccactccaccattccaattattgaaaattttattgttcctagcctcccgcaa |
26397680 |
T |
|
| Q |
119 |
cacccaaatcgttgtatgccaaataagcctcaatcccatccggattctatcatttcgatatctttcatc |
187 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26397679 |
cacccaaatcattgtatgccaaataagcctcaatcccatccggattctatcatttcgatatctttcatc |
26397611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 34774700 - 34774737
Alignment:
| Q |
117 |
aacacccaaatcgttgtatgccaaataagcctcaatcc |
154 |
Q |
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| T |
34774700 |
aacacccaaatcgtagtatgccaaataagccttaatcc |
34774737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 21016646 - 21016814
Alignment:
| Q |
19 |
ccaacatccattgccaagacattaccttgatcttttccactatctcatccactccaccattccaattattgaaaattttattgttcctagcctcccgcaa |
118 |
Q |
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|||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21016646 |
ccaacatccaccgccaagacattatcttgatctcttccactatctcatccactccaccattccaattattgaaaattttattgttcctagccttccgcaa |
21016745 |
T |
|
| Q |
119 |
cacccaaatcgttgtatgccaaataagcctcaatcccatccggattctatcatttcgatatctttcatc |
187 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21016746 |
cacccaaatcgttgtatgccaaataagcctcaatcccttccggattctatcatttcgatatctttcatc |
21016814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 42748886 - 42748923
Alignment:
| Q |
117 |
aacacccaaatcgttgtatgccaaataagcctcaatcc |
154 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| |
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| T |
42748886 |
aacacccaaatcgtggtatgccaaataagccttaatcc |
42748923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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