View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_14 (Length: 485)
Name: NF20783_low_14
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 29375123 - 29374892
Alignment:
| Q |
3 |
gagcagagaaataaacttgatagattgcatgcatgctgacatattgtacaacttttgagtatattgggccatatgttccacgtgaaaaagcttattcagc |
102 |
Q |
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| T |
29375123 |
gagcaaagaaataaacttgatagattgcatgcatgctgacatattgtacaacttttgagtgtattgggccatatgttccacgtgaaaaagcttattcagg |
29375024 |
T |
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| Q |
103 |
tatcttctatggagtacatgttttgaacagttactttatttgtacatagcttgtcttaatttggaacaatgatgtgaactgttgtgaccacggtcaagaa |
202 |
Q |
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| T |
29375023 |
tatcttctatggagtacatgttttgaacagttactttatttgtacatagcttgtcttaatttggaacaatgatgtgaactgttgtgaccacggtcaagaa |
29374924 |
T |
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| Q |
203 |
caagagcttgggaatctgggatatgaaaaatc |
234 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29374923 |
caagagcttgggaatctgggatatgaaaaatc |
29374892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 279 - 470
Target Start/End: Complemental strand, 29374847 - 29374672
Alignment:
| Q |
279 |
cttgtatggtagccaatggcatgtagctttctattgttctgtcttcatgcatgcgttgtaacaacggaccctcttagtactttattagaatagaattatt |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29374847 |
cttgtatggtagccaatggcatgtagctttctattgttctgtcttcatgcatgcgttgtaacaacggaccctctttgtactttattagaatagaattatt |
29374748 |
T |
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| Q |
379 |
acggatttcacttcagtatttctgagttcagtgactttgttgatcttgtctataggtaggtcttaatcaatattttttcttatcaaaataat |
470 |
Q |
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| T |
29374747 |
acgga----------------ctcagttcggtgactttgttgatcttgtctataggtatgtattaatcaatattttttcttatcaaaataat |
29374672 |
T |
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