View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_15 (Length: 470)
Name: NF20783_low_15
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 281109 - 280910
Alignment:
| Q |
12 |
agagaattcactttgatatatatttgtttgagtgatattatcaactgatgtactatttcagtttacgatgtttggtctataaattataattatacaaaaa |
111 |
Q |
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| T |
281109 |
agagaattcactttgatatatgcttgtttgagtgaatttatgtactgatgtactatttcagtttacgatgtttggcctataaattataattatacaaaaa |
281010 |
T |
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| Q |
112 |
tcatacttttcatatgataataatgaattcaatattggttgtaaaatataatgatattatggcataataaacccgcacgggtcgagaatctagttttaat |
211 |
Q |
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| T |
281009 |
ttatacttttcatatgataataatgaattcaatattgattgtaaaatataatgatattatggcataacaaactcgcacgggtcaagagtctagttttaat |
280910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 22305131 - 22305010
Alignment:
| Q |
66 |
atttcagtttacgatgtttggtctataaattataattatacaaaaatcatacttttcatatgataataatgaattcaatattggttgtaaaatataatga |
165 |
Q |
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| T |
22305131 |
atttcagtttacgaagtttggtctataaattataattatacaaaaattatacttttcatatgataataataaatttaatattggttgtaaaatataatga |
22305032 |
T |
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| Q |
166 |
tattatggcataataaacccgc |
187 |
Q |
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| T |
22305031 |
tattatggtataacaaacccgc |
22305010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 280790 - 280729
Alignment:
| Q |
331 |
ccctacaatgcccgggtcaaagttctagttgaaactnnnnnnntgaatctatgatgatgatt |
392 |
Q |
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| T |
280790 |
ccctgcaatgcccgggttaaagttctagttgaaactaaaaaaatgaatctatgatgatgatt |
280729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 39333366 - 39333438
Alignment:
| Q |
115 |
tacttttcatatgataataatgaattcaatattggttgtaaaatataatgatattatggcataataaacccgc |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| |
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| T |
39333366 |
tacttttcatatgataataatgaattcaatattggttgtaaaatataatgatattatggtatgacaaacccgc |
39333438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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