View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_17 (Length: 459)
Name: NF20783_low_17
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 41317427 - 41316995
Alignment:
| Q |
18 |
cccaaaacattagaagccaacaaatggctaaaccgcgacagacacacattaagaaataaaaaattggaatccaatgaacctaaaatttttgctaatgcac |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41317427 |
cccaaaacattagatgccaacaaatggctaaactgcgacagacacacatcaaaaaataaaaaatcggaatccaatgaacctaaaatttttgctaatgcac |
41317328 |
T |
|
| Q |
118 |
caacacgttccaaatcaatttcaacaaccgtcgaatcttccactttgagagccatatcctcacaaattaaggatttacaccaccgccactaaatccacat |
217 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41317327 |
caagacgttccagttcaatttcaacaaccgtcgaatcttccactttaagagccatatcctcacaaattaaggatttacaccgccgccactaaatccacat |
41317228 |
T |
|
| Q |
218 |
gcaactcaatgggctaaaaaccaaataatatatcatacctaaaatcttgaacaccgtcacaactcctccacataagcacaacaacgccttacattcctag |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41317227 |
gcaactcaatgggcttaaaaccaaataatatatcatacctaaaaccttgaacaccgtcacaactcctccacataagcacaacaacgccttacattcctag |
41317128 |
T |
|
| Q |
318 |
taaaaacacctgaccactcaccatcgcttcctcttacagctcctccacaaccaacaaacacaccctctttacaagaaccatcaatattcaacttcaccca |
417 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41317127 |
taaaaacacctggccactcaccatcgcttcctcttacaactcctccacaaccaacaaacacaccctctttacaagaaccatcaatattcaacttcaccca |
41317028 |
T |
|
| Q |
418 |
accacgcgcatggggtttccatcatataagaat |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41317027 |
accacgcgcatggggtttccatcatataagaat |
41316995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University