View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_low_18 (Length: 456)

Name: NF20783_low_18
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_low_18
NF20783_low_18
[»] scaffold0024 (2 HSPs)
scaffold0024 (306-437)||(64166-64298)
scaffold0024 (39-151)||(64300-64412)
[»] chr7 (3 HSPs)
chr7 (247-415)||(16088420-16088589)
chr7 (266-415)||(20146710-20146859)
chr7 (345-412)||(15011078-15011144)
[»] chr8 (6 HSPs)
chr8 (247-408)||(14400321-14400485)
chr8 (282-415)||(17124335-17124469)
chr8 (366-415)||(23538953-23539001)
chr8 (300-407)||(16227689-16227794)
chr8 (247-304)||(21675582-21675640)
chr8 (247-304)||(17984607-17984664)
[»] chr6 (2 HSPs)
chr6 (247-415)||(16165863-16166032)
chr6 (11-39)||(7266002-7266030)
[»] chr3 (2 HSPs)
chr3 (263-415)||(40355363-40355518)
chr3 (356-412)||(38278667-38278720)
[»] scaffold0417 (1 HSPs)
scaffold0417 (247-303)||(1793-1849)
[»] chr4 (1 HSPs)
chr4 (340-414)||(19855792-19855864)


Alignment Details
Target: scaffold0024 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 64298 - 64166
Alignment:
Q  306 ttgttattttgtttatgatttatgagatttacctctcactatgttgagattgagattttatattttgatgatgtattatgattatatgtgacatggctac 405  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  64298 ttgttattttgtttatgatttatgagatttacctctcagtatgttgagattgagattttatattttgatgatgtattatgattagatgtgacatgactac 64199  T
Q  406 tttggagatt-agtttgttgatgttgagataca 437  Q
    |||||||||| ||||||||||||||||||||||    
T  64198 tttggagattaagtttgttgatgttgagataca 64166  T

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Target: scaffold0024; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 64412 - 64300
Alignment:
Q  39 taagcgttttaaattaagaaatttagatttacgtacagaagtgaagagggaaaggaaacagacgaatctgacatgtctaattcagttttctcgatattaa 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  64412 taagcgttttaaattaagaaatttagatttacgtacagaagtgaagagggaaaggaaatagacgaatctgacatgtctaattcagttttctcgatattaa 64313  T
Q  139 aatgtcacgcatg 151  Q
    |||||||| ||||    
T  64312 aatgtcacacatg 64300  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 247 - 415
Target Start/End: Complemental strand, 16088589 - 16088420
Alignment:
Q  247 gctacctcgtttcttg-ttttggagtcttagtgtccggctctgattagggtgtctgtctgttgttattt-tg-tttatga-tttatgagatttacctctc 342  Q
    |||||||||| | ||| ||||||||||||||||||  |||||||||||||||||||||||||| ||||| || |||||||  |||||||||||||| |||    
T  16088589 gctacctcgtcttttgattttggagtcttagtgtcacgctctgattagggtgtctgtctgttgatatttatgttttatgaccttatgagatttaccactc 16088490  T
Q  343 actatgttgagatt-gagattttatattttgatgatgtattatgattatatgtgacatggctactttggagatt 415  Q
    | |||||||||||| ||||||   || |||| |||||||||| ||  ||||||| ||||| |||||||||||||    
T  16088489 agtatgttgagattggagatt---taatttggtgatgtattacga-gatatgtggcatggatactttggagatt 16088420  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 415
Target Start/End: Complemental strand, 20146859 - 20146710
Alignment:
Q  266 tggagtcttagtgtccggctctgattagggtgtctgtctgttgttattt-tgttt-atgattt-atgagatttacctctcactatgttgagattgagatt 362  Q
    |||||| |||||||| |||| |||||||| ||||||| | ||||||||| ||||| |||| || |||| ||||| | |||| ||||||||||||||   |    
T  20146859 tggagtattagtgtcgggctttgattaggatgtctgtgttttgttatttatgttttatgacttcatgaaatttatcactcagtatgttgagattgaagat 20146760  T
Q  363 ttatattttgatgatgtattatgattatatgtgacatggctactttggagatt 415  Q
    |||| ||||| | ||||||||||| |||||||| |||||||| ||||||||||    
T  20146759 ttat-ttttg-taatgtattatga-tatatgtggcatggctaatttggagatt 20146710  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 15011078 - 15011144
Alignment:
Q  345 tatgttgagattgagattttatattttgatgatgtattatgattatatgtgacatggctactttggag 412  Q
    ||||||||||||  || |||||| |||| |||||||||||||| | |||||||||||||| |||||||    
T  15011078 tatgttgagattt-gagtttatactttggtgatgtattatgatgacatgtgacatggctattttggag 15011144  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 408
Target Start/End: Original strand, 14400321 - 14400485
Alignment:
Q  247 gctacctcgtttctt-gttttggagtcttagtgtccggctctgattagggtgtctgtctgttgttattt---tgtttatga-tttatgagatttacctct 341  Q
    ||||||||||||||| | ||||||||||||||| | ||||||||||| | ||| ||||||||||| |||   | ||||| |  |||||||||||| | ||    
T  14400321 gctacctcgtttctttgctttggagtcttagtgccgggctctgattatgatgtatgtctgttgttttttatgtttttatcacattatgagatttatcact 14400420  T
Q  342 cactatgttgagatt--gagattttatattttgatgatgtattatgattatatgtgacatggctacttt 408  Q
    || | ||||||||||  ||||||   ||||||| |||||||||||||  ||||||||||||||||||||    
T  14400421 caatttgttgagatttggagatt---tattttggtgatgtattatga-gatatgtgacatggctacttt 14400485  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 415
Target Start/End: Complemental strand, 17124469 - 17124335
Alignment:
Q  282 ggctctgattagggtgtctgtctgttgttattt-tgttt-atga-tttatgagatttacctctcactatgttgagatt--gagattttatattttgatga 376  Q
    ||||||||||||| ||||||||| |||||| || ||||| |||| ||||||||||||| | |||| | ||||||||||  |||||||   |||||| |||    
T  17124469 ggctctgattaggatgtctgtcttttgttagttatgttttatgactttatgagatttatcactcagtttgttgagatttggagattt---attttggtga 17124373  T
Q  377 tgtattatgattatatgtgacatggctactttggagatt 415  Q
    ||||| ||||| ||||||| |||||||||||||||||||    
T  17124372 tgtatgatgat-atatgtggcatggctactttggagatt 17124335  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 23539001 - 23538953
Alignment:
Q  366 tattttgatgatgtattatgattatatgtgacatggctactttggagatt 415  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  23539001 tattttggtgatgtattatgat-atatgtgacatggctactttggagatt 23538953  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 407
Target Start/End: Complemental strand, 16227794 - 16227689
Alignment:
Q  300 tgtctgttgttattttgtttatga-tttatgagatttacctctcactatgttgagatt-gagattttatattttgatgatgtattatgattatatgtgac 397  Q
    |||||||||||  | | ||||||| ||||||||||||| | |||| |||||||||||| ||||||   ||||||| ||||||||||||| |||||||| |    
T  16227794 tgtctgttgtttatgtttttatgactttatgagatttatcactcagtatgttgagattggagatt---tattttggtgatgtattatga-tatatgtggc 16227699  T
Q  398 atggctactt 407  Q
    ||| ||||||    
T  16227698 atgtctactt 16227689  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 21675640 - 21675582
Alignment:
Q  247 gctacctcgtttcttgtttt-ggagtcttagtgtccggctctgattagggtgtctgtct 304  Q
    |||||||||| | ||| ||| ||||||||||||| || |||||||||||||||||||||    
T  21675640 gctacctcgtcttttgctttcggagtcttagtgtgcgactctgattagggtgtctgtct 21675582  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 17984607 - 17984664
Alignment:
Q  247 gctacctcgtttcttgttttggagtcttagtgtccggctctgattagggtgtctgtct 304  Q
    |||| ||||||| |||||||||||||| |||||| |||| |||||| | |||||||||    
T  17984607 gctagctcgttttttgttttggagtctgagtgtcgggctttgattaagatgtctgtct 17984664  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 415
Target Start/End: Original strand, 16165863 - 16166032
Alignment:
Q  247 gctacctcgtttctt-gttttggagtcttagtgtccggctctgattagggtgtctgtctgttgttattttgtttatga-tttatgaga-tttacctctca 343  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||||||||| ||||| |||||  | | |||||||  | |||||| |||| | | ||    
T  16165863 gctacctcgtttctttgctttggagtcttagtgtcgggctctgtttagggtgtatgtctattgtttatgtttttatgacatgatgagattttatcaccca 16165962  T
Q  344 ctatgttgagattgagattttatattttgatgatgtattatgattatatgtgacatggctactttggagatt 415  Q
     | | ||||||||  ||  || ||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  16165963 gtttattgagatttggaaatt-tattttggtgatgtattatga-tatatgtggcatggctactttggagatt 16166032  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 7266030 - 7266002
Alignment:
Q  11 gttttctgtgatccataattgacaacact 39  Q
    |||||||||||||||||||||||||||||    
T  7266030 gttttctgtgatccataattgacaacact 7266002  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 415
Target Start/End: Original strand, 40355363 - 40355518
Alignment:
Q  263 ttttggagtcttagtgt--ccggctctgattagggtgtctgtctgttgttattt--tgtttatga-tttatgagattta-cctctcactatgttgagatt 356  Q
    |||||||||||||||||  | ||||||||||| | ||| |||||||||||||||    ||||||| |||||||||||||  | |||| ||||||||||||    
T  40355363 ttttggagtcttagtgtgtcgggctctgattatgatgtttgtctgttgttatttacattttatgactttatgagatttattcactcaatatgttgagatt 40355462  T
Q  357 -gagattttatattttgatgatgtattatgattatatgtgacatggctactttggagatt 415  Q
     ||||||   ||||||| |||||||||||||  ||||||| |||| |||||||| |||||    
T  40355463 ggagatt---tattttggtgatgtattatga-gatatgtggcatgactactttgaagatt 40355518  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 38278667 - 38278720
Alignment:
Q  356 tgagattttatattttgatgatgtattatgattatatgtgacatggctactttggag 412  Q
    ||||||||||||||| | ||||||| |||||||||  ||||||||||||||||||||    
T  38278667 tgagattttatatttgg-tgatgtaatatgattat--gtgacatggctactttggag 38278720  T

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Target: scaffold0417 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 1849 - 1793
Alignment:
Q  247 gctacctcgtttcttgttttggagtcttagtgtccggctctgattagggtgtctgtc 303  Q
    |||| ||||||| ||| ||||||||||||||||| |||||| |||||| ||||||||    
T  1849 gctaactcgttttttgctttggagtcttagtgtcgggctctaattaggatgtctgtc 1793  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 414
Target Start/End: Original strand, 19855792 - 19855864
Alignment:
Q  340 ctcactatgttgagattgagattttatat-tttgatgatgtattatgattatatgtgacatggctactttggagat 414  Q
    |||| ||||||||| ||||||||| |||| |||| ||||||| |||||||||  |||||||||||||||| |||||    
T  19855792 ctcagtatgttgag-ttgagatttaatatatttggtgatgtagtatgattat--gtgacatggctactttagagat 19855864  T

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