View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_2 (Length: 737)
Name: NF20783_low_2
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 688; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 17 - 728
Target Start/End: Original strand, 417788 - 418499
Alignment:
| Q |
17 |
cagtattttgctctcaagttttaattatccacatgactggtctcttttcatcacaaacaaatatattcagcttcctacagtacgcttatttcacatgctc |
116 |
Q |
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| T |
417788 |
cagtatttttctctcaagttttaattatccacatgactggtctcttttcatcacaaacaaatatattcagcttcctacagtacgcttatttcacatgctc |
417887 |
T |
|
| Q |
117 |
agatcatgctatattcccttttataaccaagccttttccatcaattcttcaacactactccagtccaaattcaccttcactctatatgatgttcctgggt |
216 |
Q |
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| T |
417888 |
agatcatgctatattcccttttttaaccaagccttttccatcaattcttcaacactactccggtccaaattcaccttcactctatatgatgttcctgggt |
417987 |
T |
|
| Q |
217 |
atgccctattctcttgtcaacctgcttcacactcgtacagtaaggtacaaacacttttacaacttacccaccgccattcaaccccatgcaaatcaaagga |
316 |
Q |
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| T |
417988 |
atgccctattctcttgtcaacctgcttcacactcgtacagtaaggtacaaacacttttacaacttacccaccgccattcaaccccatgcaaatcaaagga |
418087 |
T |
|
| Q |
317 |
ttatcacaccattgtgtaaggtcacatccaaaacctttgatctttgcatttagccactccacacacttacttccgctctttccactattataaaaatctg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
418088 |
ttatcacaccattgtgtaaggtcacatccaaaacctttgatctttgcatttagccactccacacacttacttctgctctttccactattataaaaatctg |
418187 |
T |
|
| Q |
417 |
cattgatatatacattagttgatttaaggagtgtttggcatccttctagtatgggttgcattatgttatgtatcttacaacttttatcctaaaactgagt |
516 |
Q |
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| T |
418188 |
cattgatatatacattagttgatttaaggaatgtttggcatccttctagtatgggttgcattatgttatgtatcttacaacttttatcctaaaactgagt |
418287 |
T |
|
| Q |
517 |
ctccattttgtttgttacatgggaattaatttttgtgcaaacaatgttgtggatgaatttttaattaattaaattttgcttctaagtgaggattattaaa |
616 |
Q |
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| T |
418288 |
ctccattttgtttgttacatgggaattagtttttgtgcaaacaatgttgtggatgaatttttaattaattaaattttgcttctaagtgaggattattaaa |
418387 |
T |
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| Q |
617 |
ttgtgttgtatgaaattgtttcagaggtcaaatggggcaacctgttgctgaacttaagggagaagatgaccagaacaaactcgctaatggaaatgatacc |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
418388 |
ttgtgttgtatgaaattgtttcagaggtcaaatggggcaacctgttgctgaacttaagggagaagatgaccagaacaaactcgctaatggaaatgatacc |
418487 |
T |
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| Q |
717 |
aagaagaataat |
728 |
Q |
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|||||||||||| |
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| T |
418488 |
aagaagaataat |
418499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 622 - 691
Target Start/End: Original strand, 406074 - 406143
Alignment:
| Q |
622 |
ttgtatgaaattgtttcagaggtcaaatggggcaacctgttgctgaacttaagggagaagatgaccagaa |
691 |
Q |
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|||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||| ||||| |||| |
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| T |
406074 |
ttgtatgaaattgtttcagaggccaaatggggccacctattgctgaagttaagggagaaaatgacgagaa |
406143 |
T |
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