View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_21 (Length: 433)
Name: NF20783_low_21
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 12278108 - 12277695
Alignment:
| Q |
17 |
atattgtgcgtgtttgtattaataataaaaaggctaagtaacttttttaattagtccatgtaatctacaattttttatataatttctatgaactgttggg |
116 |
Q |
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| T |
12278108 |
atattgtgcgtgtttgtattaataataaaaaggctaagtaacttttttaattagtccatgtaatctacaattttttatataatttctatgaactgttggg |
12278009 |
T |
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| Q |
117 |
ttcgttataaaaatattcannnnnnngttctagtgagattagctcagatggcggatcctatatttttaggttgttttgcctatctctttgcttgacaggt |
216 |
Q |
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| T |
12278008 |
ttcgttataaaaacattcatttttt-gttctagtgagattagctcagatggcggatcctatatttttaggttgttttgcctatctctttgcttgacaggt |
12277910 |
T |
|
| Q |
217 |
tagtgttgcctcacttctcaaatggtgatatttttgtgaagcagacttctcagtttctactccctcccttagtgtttgttaatgtgacatccttcatttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12277909 |
tagtgttgcctcacttctcaaatggtgatatttttgtgaagcagacttctcagtttctactccctcccttagtgtttgttaatgtgacatccttcatttg |
12277810 |
T |
|
| Q |
317 |
gcgccattgtattcctccgtctcagnnnnnnnnnnnngagacttatgttgttatgtacggtaaaatttctacagataatggcttagggggtgcacatagg |
416 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12277809 |
gcgccattgtattcctccgtctcagtttttattttttgagacttatgttgttatgtacggtaaaatttctacagataatggcttagggggtgcacatagg |
12277710 |
T |
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| Q |
417 |
tttctatctgtgttc |
431 |
Q |
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||||||||||||||| |
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| T |
12277709 |
tttctatctgtgttc |
12277695 |
T |
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