View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_22 (Length: 429)
Name: NF20783_low_22
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 4 - 410
Target Start/End: Complemental strand, 2984647 - 2984241
Alignment:
| Q |
4 |
ccattatgaaatgaacaaaaccatgtaagacaatctgataaacgctg---aatcagaattgtgacagtgaggctagcttgattaatcaactatgatgcat |
100 |
Q |
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| T |
2984647 |
ccattatgaagtgaacaaaaccatgtaagacaatctgatatacgctgctgaatcagagttgtgacagtgaggctagcttgattaatcaactatgatgcat |
2984548 |
T |
|
| Q |
101 |
gttgaatcagtgcaaaccatctgatatacttactgatccagagtaaaaacaggtggactagggtcttatagttcctttaaagaacaatgatagttgaatt |
200 |
Q |
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| T |
2984547 |
gttgaatcagtgcaaaccatctgatatacttactgatccagagtaaaaacaggtggactagggtcttatagttcctttaaagaacaatgatagttgaatt |
2984448 |
T |
|
| Q |
201 |
tggcttcactctctgaattgtttgcataaaaatttcgacaagatactaagaaatttgtggacaaaatgatcatttttataacatgtttcaatgacatggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2984447 |
tggcttcactctctgaattgtttgcataaaaatttcgacaagatactaagaaatttgtggataaaatgatcatttttataacatgtttcaatgacatggc |
2984348 |
T |
|
| Q |
301 |
caaattttacaaaatatgtacacactttatatctactccttcttcatacatgttttgtcatgtctaaacatgcacatggtattggacacatacattgttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2984347 |
caaattttacaaaatatgtacacactttatatctactc---cttcatacatgtcttgtcatgtctaaacatgcacatggtattggacacatacattgttg |
2984251 |
T |
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| Q |
401 |
aattgacctg |
410 |
Q |
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|||||||||| |
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| T |
2984250 |
aattgacctg |
2984241 |
T |
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