View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_23 (Length: 425)
Name: NF20783_low_23
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 134 - 356
Target Start/End: Complemental strand, 32213703 - 32213481
Alignment:
| Q |
134 |
acatattgcaccatcaaaaaggtttctacttttggtagacacgagtaccagcttgcgcgatgcacacatcaaccaatcaagaactgccaagtaagcttaa |
233 |
Q |
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| T |
32213703 |
acatattgcaccatcaaaaaggtttctacttttggtagacacgcgtaccagcatgcgcgatgcacacatcaaccaatcaagaactgccaagtcagcttaa |
32213604 |
T |
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| Q |
234 |
gtataatgaactaaacctaatatgttagggtgctgtattagataaactggacattaagccaagagattggtcttgctttattttgttaaattgttgtgaa |
333 |
Q |
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| T |
32213603 |
gtataatgaactaaacctaatatgttagggtgctgtattagataaactggacattaagccaagagattggtcttgctttattttgttaaattgtcgtgaa |
32213504 |
T |
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| Q |
334 |
catagaaactcgattgttcttgt |
356 |
Q |
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| T |
32213503 |
catagaaactcgattgttcttgt |
32213481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 32216450 - 32216311
Alignment:
| Q |
2 |
tacttgaggtaattctatctcaaattcaaaaggcaattcaatggtttattctccttgaagaaccaaagaaatgaaatgcaagatcttattacgaaaactc |
101 |
Q |
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| T |
32216450 |
tacttgaggtaattctatctcaaattccaaaggcaattcaaaggtttattctccttgaagaaccaaagaaatgaaatgcaagatctttttacgaaaactc |
32216351 |
T |
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| Q |
102 |
acgcacgaggtgcattatactctatgtgacgcacatattg |
141 |
Q |
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| T |
32216350 |
acgcacgaggtgcattatactctatgtgacgcacatattg |
32216311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 32225721 - 32225604
Alignment:
| Q |
2 |
tacttgaggtaattctatctcaaattcaaaaggcaattcaatggtttattctccttgaagaaccaaagaaatgaaatgcaagatcttattacgaaaactc |
101 |
Q |
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| T |
32225721 |
tacttgaggtaattctatctcaaattccaaaggcaagtcaaaagtttattctccttgaagaaccaaataaatgaaatgcaagatctttttacgaaaacta |
32225622 |
T |
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| Q |
102 |
acgcacgaggtgcattat |
119 |
Q |
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| T |
32225621 |
acgcacgaggtgcattat |
32225604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 425
Target Start/End: Complemental strand, 32212941 - 32212896
Alignment:
| Q |
380 |
tgtagaaattaaacgaccctgtagaaaccgacttattcttttcatt |
425 |
Q |
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| T |
32212941 |
tgtagaaattaaacgaccctgtagaaaccaacttattcttttcatt |
32212896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 25228291 - 25228235
Alignment:
| Q |
287 |
ttaagccaagagattggtcttgctttattttgttaaattgttgtgaacatagaaactc |
344 |
Q |
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| T |
25228291 |
ttaagccaagacattggtcttgatctattttgttaaattgtcgtg-acatagaaactc |
25228235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 19996004 - 19995942
Alignment:
| Q |
258 |
ttagggtgctgtattagataaactggacattaagccaagagattggtcttgctttattttgtt |
320 |
Q |
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| T |
19996004 |
ttagggttctatattagataaataggacattcaaccaagaaattggtcttgatttattttgtt |
19995942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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