View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_24 (Length: 421)
Name: NF20783_low_24
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4537410 - 4537186
Alignment:
| Q |
1 |
cttgagtcttaaaggaagggattgtctagccatactaaaatcatgattaatataagcaaa-taaatttttatacagttcctacga-----ggatcgtcca |
94 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| | || ||||||| |
|
|
| T |
4537410 |
cttgagtcttaaagaaagggattgtctagccatactaaaatcatgattaatataagcaaaatcaatttttatacggttcctacaaatcaagggtcgtcca |
4537311 |
T |
|
| Q |
95 |
aaagtaaggacagtcccttatttacaatctcatcttttggtacttaacaaattgccacttcatgatttgttacttttaagtcttacattgccttggtgac |
194 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4537310 |
aaagtaaggacaatcccttatttacaatctcatcttttggtacttaacaaattgccacttcatgatttgttacttttaagtcttacattgccttggtgac |
4537211 |
T |
|
| Q |
195 |
cctgcctataccaaaacatgtgata |
219 |
Q |
| |
|
||| || |||||||||||||||||| |
|
|
| T |
4537210 |
cctacccataccaaaacatgtgata |
4537186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 225 - 403
Target Start/End: Complemental strand, 4536859 - 4536675
Alignment:
| Q |
225 |
ttgtaatatttccaaatctaaggcttaaatg------tagatttgttactcctacttttttctagcacatgagtagtgagttgtgaccgtatgtttgcaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4536859 |
ttgtaatatttccaaatctaaggcttaaatgattttgtacatttgttactcctatttttttctagtacatgagtagtgagttgtgaccgtatgtttgcaa |
4536760 |
T |
|
| Q |
319 |
gagatcacacaataatgcctatgcataagtgagggcaattcaattggggtaacatatcttaatctgactctgaacccactcatta |
403 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4536759 |
gagatcacacaataatgcctatggataagtgagggcaattcaattggggtaacatatcttaatctgactctgaacccactcatta |
4536675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 52084228 - 52084050
Alignment:
| Q |
1 |
cttgagtcttaaaggaagggattgtctagccatactaaaatcatgattaatataagcaaa-taaatttttatacagttc--cta--cgaggatcgtccaa |
95 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||| | ||||||| | |||| | | | ||| |||||||| |
|
|
| T |
52084228 |
cttgagtcttaaagaaagg-attgtctagccatgctaaaatcatgattcgtataagcaaaatcaatttttg--cggttctacaaatcaagggtcgtccaa |
52084132 |
T |
|
| Q |
96 |
aagtaaggacag----tcccttatttacaatctcatcttttggtacttaacaaattgccacttcatgatttgttacttttaa |
173 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
52084131 |
aagtaaggtcagacaatcccttatttacaatctcatcttttggtacataacaaattgcctcttcatgatttgttactcttaa |
52084050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University