View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_25 (Length: 416)
Name: NF20783_low_25
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 22 - 398
Target Start/End: Original strand, 37957272 - 37957648
Alignment:
| Q |
22 |
ataaaagcaagctatgtcaagaaatatatccttttgctcgttgtcaagtccatcataactcaacttgaacgcactgaaaatttcatcatggggaagcttt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37957272 |
ataaaagcaagctatgtcaagaaatatatccttttgctcgttgtcaagtccatcataactcaacttgaacgcactgaaaatttcatcatgggaaagcttt |
37957371 |
T |
|
| Q |
122 |
tcgagcttttgcaaatgactttcccatgcttcctcttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcataatcta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957372 |
tcgagcttttgcaaatgactttcccatgcttcctcttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcataatcta |
37957471 |
T |
|
| Q |
222 |
ataccttttttgataaactcacataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957472 |
ataccttttttgataaactcacataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatt |
37957571 |
T |
|
| Q |
322 |
tactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatgattatactccctt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
37957572 |
tactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatggttctactccctt |
37957648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 29 - 396
Target Start/End: Complemental strand, 37930304 - 37929937
Alignment:
| Q |
29 |
caagctatgtcaagaaatatatccttttgctcgttgtcaagtccatcataactcaacttgaacgcactgaaaatttcatcatggggaagcttttcgagct |
128 |
Q |
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||||||||||||| ||||||||||||||| ||| ||||||| |||||||||| ||||| ||| | ||||| ||| | || |||||||||||||||| |
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| T |
37930304 |
caagctatgtcaacaaatatatccttttgttcgccgtcaagttcatcataacttaacttcaacactttgaaagttttaagatcaggaagcttttcgagct |
37930205 |
T |
|
| Q |
129 |
tttgcaaatgactttcccatgcttcctcttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcataatctaatacctt |
228 |
Q |
| |
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||||||| | |||||||||||||| || | ||||||| |||| ||| ||||||||||| || |||| ||||| || |||||||||| ||||||||| |
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| T |
37930204 |
tttgcaactcactttcccatgctttctttgttctgccaagaagcaataatcccaaaactttgagagctaatggaactcctttagcataatttaatacctt |
37930105 |
T |
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| Q |
229 |
ttttgataaactcacataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttacttta |
328 |
Q |
| |
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|| |||||| |||||||||| || |||||||| |||||||||||||||| | |||||||||||| ||||||||||||| || ||||||| | |||| | |
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| T |
37930104 |
ttctgataagctcacataagtttatattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttca |
37930005 |
T |
|
| Q |
329 |
tatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatgattatactccc |
396 |
Q |
| |
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||||||||||| |||||| |||||| ||||||||||||||||| || ||||||||||| ||||||| |
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|
| T |
37930004 |
tatatttcatcggcattggcattctcaagcacttgcttgtctctactactcacaatgattctactccc |
37929937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 393
Target Start/End: Original strand, 44644330 - 44644459
Alignment:
| Q |
264 |
tttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttgagcacttg |
363 |
Q |
| |
|
|||||||||| ||| | ||||||||||| |||||| || ||| || |||||| || |||| ||||||| ||||||| ||| ||||||| || || || |
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| T |
44644330 |
tttgtttaaaggcatttaaacagaagagtcgtagagattcatgaaaattcatctccttgacttcatatattccatcagctttgacattcttcagtacctg |
44644429 |
T |
|
| Q |
364 |
cttgtctctgttagtcacaatgattatact |
393 |
Q |
| |
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| |||||||| |||||||||||||| |||| |
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| T |
44644430 |
catgtctctgctagtcacaatgattctact |
44644459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 19869328 - 19869225
Alignment:
| Q |
290 |
agttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatgatta |
389 |
Q |
| |
|
|||| ||||||||||||| || ||||||||| |||| ||||||||||||||||| |||||| || |||||| ||||||| |||||||||||||| |
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| T |
19869328 |
agttgtagagaatcttgaaaattcatctcattcacttcatatatttcatcagcatctatattcttaagtacttgcatgtctctactagtcacaatgattc |
19869229 |
T |
|
| Q |
390 |
tact |
393 |
Q |
| |
|
|||| |
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|
| T |
19869228 |
tact |
19869225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 19869563 - 19869483
Alignment:
| Q |
26 |
aagcaagctatgtcaagaaatatatccttttgctcgttgtcaagtccatcataactcaacttgaacgcactgaaaatttca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| | ||||| ||||| ||||| || || || |||| ||||||||| |
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|
| T |
19869563 |
aagcaagctatgtcaagaaatatatccttctgctcatcatcaagcccatcgtaacttaatttcaaggcaccaaaaatttca |
19869483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 393
Target Start/End: Complemental strand, 25721671 - 25721520
Alignment:
| Q |
242 |
acataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcag |
341 |
Q |
| |
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||||||| || ||| |||| |||||||||||| ||| | ||| |||||||| || ||||||||| ||| |||||| || |||| ||||||||||| | |
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| T |
25721671 |
acataagcttttataggatagttttgtttaaaggcatttaaactgaagagttgtactgaatcttgaaaacacatctccttgacttcgtatatttcatctg |
25721572 |
T |
|
| Q |
342 |
cattgccattcttgagcacttgcttgtctctgttagtcacaatgattatact |
393 |
Q |
| |
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| || ||||||| ||||| || |||||||| |||||| ||||||| |||| |
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| T |
25721571 |
aaatggcattcttaagcacatgtttgtctctactagtcataatgattctact |
25721520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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